Wall clock time and date at job start Mon Mar 30 2020 02:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.72533 * 2 1 4 4 C 1.54943 * 110.66905 * 236.90973 * 2 1 3 5 5 C 1.54588 * 102.92202 * 204.15001 * 4 2 1 6 6 N 1.46903 * 110.30668 * 262.94187 * 5 4 2 7 7 C 1.50699 * 110.30970 * 140.87377 * 5 4 2 8 8 H 1.07995 * 120.00179 * 4.93601 * 7 5 4 9 9 C 1.37884 * 119.99913 * 185.21940 * 7 5 4 10 10 N 1.31517 * 120.00045 * 354.76952 * 9 7 5 11 11 Si 1.86799 * 120.00012 * 174.77579 * 9 7 5 12 12 H 1.48492 * 109.47184 * 94.99301 * 11 9 7 13 13 H 1.48508 * 109.46783 * 214.99383 * 11 9 7 14 14 H 1.48502 * 109.46807 * 334.98988 * 11 9 7 15 15 C 1.53997 * 105.14215 * 21.95514 * 5 4 2 16 16 N 1.47897 * 107.05748 * 1.22241 * 15 5 4 17 17 C 1.46898 * 111.00449 * 214.15776 * 16 15 5 18 18 H 1.09007 * 109.46696 * 183.09343 * 1 2 3 19 19 H 1.08997 * 109.47514 * 303.09045 * 1 2 3 20 20 H 1.09002 * 109.47544 * 63.09267 * 1 2 3 21 21 H 1.09003 * 110.72124 * 85.78811 * 4 2 1 22 22 H 1.08999 * 110.71784 * 322.50575 * 4 2 1 23 23 H 1.00902 * 110.99749 * 173.14410 * 6 5 4 24 24 H 1.00897 * 110.99927 * 297.09368 * 6 5 4 25 25 H 0.96994 * 120.00327 * 179.97438 * 10 9 7 26 26 H 1.08999 * 109.92130 * 120.58356 * 15 5 4 27 27 H 1.09001 * 109.91414 * 241.87643 * 15 5 4 28 28 H 1.08996 * 109.47115 * 177.40151 * 17 16 15 29 29 H 1.09003 * 109.46899 * 297.39849 * 17 16 15 30 30 H 1.08996 * 109.47464 * 57.39622 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9157 1.0195 0.0000 4 6 2.0769 -0.7915 -1.2146 5 6 3.4852 -1.2196 -0.7424 6 7 4.4990 -0.2857 -1.2505 7 6 3.7883 -2.6215 -1.2049 8 1 3.0927 -3.1402 -1.8478 9 6 4.9509 -3.2440 -0.8024 10 7 5.8433 -2.5802 -0.1005 11 14 5.2585 -5.0303 -1.2541 12 1 6.0724 -5.0941 -2.4945 13 1 5.9876 -5.7020 -0.1484 14 1 3.9598 -5.7148 -1.4784 15 6 3.4279 -1.1647 0.7955 16 7 2.0543 -0.7589 1.1642 17 6 2.0580 0.0719 2.3757 18 1 -0.3633 -1.0263 0.0555 19 1 -0.3634 0.5610 0.8609 20 1 -0.3634 0.4651 -0.9164 21 1 2.1429 -0.1511 -2.0942 22 1 1.4561 -1.6642 -1.4173 23 1 5.4065 -0.4890 -0.8589 24 1 4.5293 -0.2984 -2.2589 25 1 6.6609 -3.0182 0.1829 26 1 3.6487 -2.1480 1.2107 27 1 4.1440 -0.4322 1.1678 28 1 1.0409 0.3945 2.5981 29 1 2.4465 -0.5082 3.2128 30 1 2.6895 0.9457 2.2151 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260559160.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:57 Heat of formation + Delta-G solvation = -2.329834 kcal Electronic energy + Delta-G solvation = -11955.793201 eV Core-core repulsion = 9978.454484 eV Total energy + Delta-G solvation = -1977.338717 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.31077 -34.01050 -31.41749 -30.71649 -27.75167 -25.44230 -25.01338 -22.93242 -19.43332 -18.92752 -16.22659 -15.17066 -14.75433 -14.00079 -13.67959 -13.45941 -12.89964 -12.69244 -11.92834 -11.78830 -11.38146 -11.18601 -10.96161 -10.74642 -10.54529 -10.28362 -10.11672 -9.94796 -9.56602 -9.14453 -8.57237 -7.50844 -7.17215 -6.03986 -4.16978 3.25198 3.33472 3.38380 4.37397 4.91209 5.18332 5.60465 5.71568 5.91712 6.02359 6.08403 6.23291 6.33237 6.34607 6.45993 6.49624 6.65280 6.80288 7.05681 7.10452 7.38212 7.63711 7.79707 7.88028 8.06705 8.22218 8.79225 9.00554 9.14050 9.53470 10.94294 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.052543 B = 0.013581 C = 0.013164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.771816 B = 2061.189485 C = 2126.528154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.061 3.939 3 H 0.043 0.957 4 C -0.101 4.101 5 C 0.228 3.772 6 N -0.849 5.849 7 C -0.534 4.534 8 H 0.055 0.945 9 C 0.066 3.934 10 N -0.893 5.893 11 Si 0.892 3.108 12 H -0.283 1.283 13 H -0.286 1.286 14 H -0.273 1.273 15 C 0.076 3.924 16 N -0.524 5.524 17 C 0.021 3.979 18 H 0.059 0.941 19 H 0.042 0.958 20 H 0.050 0.950 21 H 0.052 0.948 22 H 0.063 0.937 23 H 0.351 0.649 24 H 0.314 0.686 25 H 0.263 0.737 26 H 0.077 0.923 27 H 0.028 0.972 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.252 3.541 0.908 6.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.047 4.047 3 H 0.061 0.939 4 C -0.140 4.140 5 C 0.136 3.864 6 N -0.378 5.378 7 C -0.574 4.574 8 H 0.074 0.926 9 C -0.136 4.136 10 N -0.532 5.532 11 Si 0.720 3.280 12 H -0.209 1.209 13 H -0.211 1.211 14 H -0.198 1.198 15 C -0.051 4.051 16 N -0.248 5.248 17 C -0.128 4.128 18 H 0.078 0.922 19 H 0.061 0.939 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.081 0.919 23 H 0.166 0.834 24 H 0.123 0.877 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -5.831 3.634 1.508 7.034 hybrid contribution 1.303 -1.176 -0.621 1.862 sum -4.528 2.458 0.887 5.228 Atomic orbital electron populations 1.21679 0.95543 1.01774 1.00012 1.22671 0.94097 0.95700 0.92225 0.93866 1.22556 0.98100 0.98063 0.95279 1.19064 0.87583 0.89516 0.90271 1.59553 1.12630 1.55354 1.10305 1.21853 1.04918 1.00132 1.30452 0.92640 1.25003 0.95938 0.98026 0.94603 1.69762 1.09052 1.36472 1.37939 0.86573 0.78250 0.85226 0.77906 1.20924 1.21150 1.19827 1.22809 0.85134 0.99632 0.97572 1.64803 1.22228 1.35585 1.02217 1.22421 1.00026 0.95821 0.94579 0.92163 0.93871 0.93116 0.92889 0.91873 0.83354 0.87706 0.92690 0.90472 0.95344 0.92676 0.92276 0.96255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 9.44 37.16 0.35 -1.80 16 2 C 0.06 1.22 2.92 -65.79 -0.19 1.02 16 3 H 0.04 0.88 8.00 -51.93 -0.42 0.46 16 4 C -0.10 -2.21 5.75 -24.87 -0.14 -2.35 16 5 C 0.23 5.61 0.81 -131.40 -0.11 5.51 16 6 N -0.85 -20.32 8.76 0.91 0.01 -20.31 16 7 C -0.53 -14.38 8.04 -34.44 -0.28 -14.66 16 8 H 0.06 1.51 7.59 -52.49 -0.40 1.12 16 9 C 0.07 1.78 4.92 -17.82 -0.09 1.69 16 10 N -0.89 -24.31 10.72 55.43 0.59 -23.71 16 11 Si 0.89 21.08 29.54 -169.99 -5.02 16.05 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.08 1.87 5.28 -2.75 -0.01 1.86 16 16 N -0.52 -11.18 5.24 -230.84 -1.21 -12.39 16 17 C 0.02 0.38 9.33 60.06 0.56 0.94 16 18 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 19 H 0.04 0.63 7.59 -51.93 -0.39 0.24 16 20 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.05 1.09 8.05 -51.93 -0.42 0.67 16 22 H 0.06 1.40 7.63 -51.93 -0.40 1.00 16 23 H 0.35 9.00 7.19 -39.29 -0.28 8.71 16 24 H 0.31 7.19 9.03 -39.29 -0.35 6.84 16 25 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.08 2.11 7.08 -51.93 -0.37 1.74 16 27 H 0.03 0.72 7.48 -51.93 -0.39 0.33 16 28 H 0.05 0.86 7.50 -51.93 -0.39 0.47 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.02 0.35 7.99 -51.93 -0.42 -0.07 16 LS Contribution 239.92 15.07 3.62 3.62 Total: -1.00 -27.07 239.92 -6.55 -33.61 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -4.62 Total: 10.92 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 0.09 Total: -7.80 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.61 Total: -56.41 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -27.07 -6.55 -33.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260559160.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.284 kcal (2) G-P(sol) polarization free energy of solvation -27.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds