Wall clock time and date at job start Mon Mar 30 2020 02:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.72533 * 2 1 4 4 C 1.54943 * 110.66905 * 236.90973 * 2 1 3 5 5 C 1.54588 * 102.92202 * 204.15001 * 4 2 1 6 6 N 1.46903 * 110.30668 * 262.94187 * 5 4 2 7 7 C 1.50699 * 110.30970 * 140.87377 * 5 4 2 8 8 H 1.07995 * 120.00179 * 4.93601 * 7 5 4 9 9 C 1.37884 * 119.99913 * 185.21940 * 7 5 4 10 10 N 1.31517 * 120.00045 * 354.76952 * 9 7 5 11 11 Si 1.86799 * 120.00012 * 174.77579 * 9 7 5 12 12 H 1.48492 * 109.47184 * 94.99301 * 11 9 7 13 13 H 1.48508 * 109.46783 * 214.99383 * 11 9 7 14 14 H 1.48502 * 109.46807 * 334.98988 * 11 9 7 15 15 C 1.53997 * 105.14215 * 21.95514 * 5 4 2 16 16 N 1.47897 * 107.05748 * 1.22241 * 15 5 4 17 17 C 1.46898 * 111.00449 * 214.15776 * 16 15 5 18 18 H 1.09007 * 109.46696 * 183.09343 * 1 2 3 19 19 H 1.08997 * 109.47514 * 303.09045 * 1 2 3 20 20 H 1.09002 * 109.47544 * 63.09267 * 1 2 3 21 21 H 1.09003 * 110.72124 * 85.78811 * 4 2 1 22 22 H 1.08999 * 110.71784 * 322.50575 * 4 2 1 23 23 H 1.00902 * 110.99749 * 173.14410 * 6 5 4 24 24 H 1.00897 * 110.99927 * 297.09368 * 6 5 4 25 25 H 0.96994 * 120.00327 * 179.97438 * 10 9 7 26 26 H 1.08999 * 109.92130 * 120.58356 * 15 5 4 27 27 H 1.09001 * 109.91414 * 241.87643 * 15 5 4 28 28 H 1.08996 * 109.47115 * 177.40151 * 17 16 15 29 29 H 1.09003 * 109.46899 * 297.39849 * 17 16 15 30 30 H 1.08996 * 109.47464 * 57.39622 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9157 1.0195 0.0000 4 6 2.0769 -0.7915 -1.2146 5 6 3.4852 -1.2196 -0.7424 6 7 4.4990 -0.2857 -1.2505 7 6 3.7883 -2.6215 -1.2049 8 1 3.0927 -3.1402 -1.8478 9 6 4.9509 -3.2440 -0.8024 10 7 5.8433 -2.5802 -0.1005 11 14 5.2585 -5.0303 -1.2541 12 1 6.0724 -5.0941 -2.4945 13 1 5.9876 -5.7020 -0.1484 14 1 3.9598 -5.7148 -1.4784 15 6 3.4279 -1.1647 0.7955 16 7 2.0543 -0.7589 1.1642 17 6 2.0580 0.0719 2.3757 18 1 -0.3633 -1.0263 0.0555 19 1 -0.3634 0.5610 0.8609 20 1 -0.3634 0.4651 -0.9164 21 1 2.1429 -0.1511 -2.0942 22 1 1.4561 -1.6642 -1.4173 23 1 5.4065 -0.4890 -0.8589 24 1 4.5293 -0.2984 -2.2589 25 1 6.6609 -3.0182 0.1829 26 1 3.6487 -2.1480 1.2107 27 1 4.1440 -0.4322 1.1678 28 1 1.0409 0.3945 2.5981 29 1 2.4465 -0.5082 3.2128 30 1 2.6895 0.9457 2.2151 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260559160.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:57 Heat of formation + Delta-G solvation = -22.439122 kcal Electronic energy + Delta-G solvation = -11956.665205 eV Core-core repulsion = 9978.454484 eV Total energy + Delta-G solvation = -1978.210721 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.05289 -35.88035 -33.31796 -32.34063 -29.52564 -27.37616 -26.66445 -24.63889 -21.11355 -20.78722 -18.23409 -16.90820 -16.63680 -15.79407 -15.51143 -15.05717 -14.71810 -14.25849 -13.60419 -13.34064 -13.05219 -12.94135 -12.71005 -12.59752 -12.38808 -11.90248 -11.82959 -11.71654 -11.42898 -11.00004 -10.60656 -9.22956 -9.14466 -8.07358 -6.28129 1.36737 1.40573 1.49923 2.39879 3.11024 3.29435 4.04050 4.16420 4.39203 4.45472 4.56556 4.65221 4.73131 4.87224 4.93199 5.01726 5.05549 5.14780 5.26472 5.52025 5.54415 5.66014 5.69253 6.13675 6.21518 6.39685 6.74781 7.02796 7.13542 7.45904 8.87573 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.052543 B = 0.013581 C = 0.013164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.771816 B = 2061.189485 C = 2126.528154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.065 3.935 3 H 0.042 0.958 4 C -0.098 4.098 5 C 0.215 3.785 6 N -0.840 5.840 7 C -0.553 4.553 8 H 0.045 0.955 9 C 0.027 3.973 10 N -0.909 5.909 11 Si 0.950 3.050 12 H -0.277 1.277 13 H -0.284 1.284 14 H -0.275 1.275 15 C 0.091 3.909 16 N -0.534 5.534 17 C 0.021 3.979 18 H 0.053 0.947 19 H 0.062 0.938 20 H 0.071 0.929 21 H 0.062 0.938 22 H 0.055 0.945 23 H 0.340 0.660 24 H 0.319 0.681 25 H 0.264 0.736 26 H 0.041 0.959 27 H 0.010 0.990 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.374 3.879 0.865 7.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.043 4.043 3 H 0.060 0.940 4 C -0.137 4.137 5 C 0.123 3.877 6 N -0.368 5.368 7 C -0.593 4.593 8 H 0.063 0.937 9 C -0.173 4.173 10 N -0.549 5.549 11 Si 0.776 3.224 12 H -0.203 1.203 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.038 4.038 16 N -0.259 5.259 17 C -0.128 4.128 18 H 0.072 0.928 19 H 0.081 0.919 20 H 0.090 0.910 21 H 0.081 0.919 22 H 0.074 0.926 23 H 0.154 0.846 24 H 0.128 0.872 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.029 0.971 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -6.970 3.985 1.459 8.160 hybrid contribution 1.651 -1.262 -0.596 2.162 sum -5.319 2.723 0.862 6.037 Atomic orbital electron populations 1.21621 0.92380 1.02047 1.02109 1.22728 0.96478 0.94752 0.90378 0.94042 1.22500 0.96236 0.98273 0.96693 1.19198 0.89229 0.88817 0.90492 1.59559 1.11867 1.54853 1.10556 1.22096 1.05008 1.01516 1.30698 0.93668 1.25621 0.95817 1.01294 0.94602 1.69853 1.09168 1.37559 1.38280 0.85679 0.77888 0.81118 0.77694 1.20329 1.20990 1.19948 1.22455 0.86768 0.97216 0.97332 1.64758 1.19910 1.37329 1.03898 1.22492 1.01922 0.95263 0.93096 0.92769 0.91878 0.90991 0.91900 0.92615 0.84577 0.87214 0.92702 0.94048 0.97124 0.89653 0.92066 0.96392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.61 9.44 71.98 0.68 -2.93 16 2 C 0.06 2.43 2.92 45.26 0.13 2.56 16 3 H 0.04 1.58 8.00 -2.38 -0.02 1.56 16 4 C -0.10 -4.18 5.75 31.80 0.18 -4.00 16 5 C 0.21 10.60 0.81 3.66 0.00 10.60 16 6 N -0.84 -40.20 8.76 -151.04 -1.32 -41.53 16 7 C -0.55 -30.02 8.04 25.60 0.21 -29.81 16 8 H 0.05 2.48 7.59 -2.91 -0.02 2.46 16 9 C 0.03 1.45 4.92 84.66 0.42 1.87 16 10 N -0.91 -49.95 10.72 21.45 0.23 -49.72 16 11 Si 0.95 43.34 29.54 68.60 2.03 45.37 16 12 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 14 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 15 C 0.09 4.50 5.28 86.45 0.46 4.96 16 16 N -0.53 -22.17 5.24 -884.25 -4.64 -26.81 16 17 C 0.02 0.71 9.33 127.69 1.19 1.91 16 18 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 19 H 0.06 1.59 7.59 -2.39 -0.02 1.58 16 20 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 21 H 0.06 2.50 8.05 -2.39 -0.02 2.48 16 22 H 0.06 2.42 7.63 -2.39 -0.02 2.40 16 23 H 0.34 17.62 7.19 -89.69 -0.64 16.98 16 24 H 0.32 14.52 9.03 -89.70 -0.81 13.71 16 25 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 26 H 0.04 2.31 7.08 -2.39 -0.02 2.29 16 27 H 0.01 0.54 7.48 -2.39 -0.02 0.53 16 28 H 0.08 2.39 7.50 -2.39 -0.02 2.37 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.02 0.61 7.99 -2.39 -0.02 0.59 16 Total: -1.00 -56.79 239.92 -0.77 -57.56 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: -0.33 Total: 29.98 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: 3.27 Total: -14.85 kcal Atomic # 7 Polarization: -112.32 SS G_CDS: -5.73 Total: -118.05 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -56.79 -0.77 -57.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260559160.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.121 kcal (2) G-P(sol) polarization free energy of solvation -56.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds