Wall clock time and date at job start Mon Mar 30 2020 02:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.06450 * 2 1 4 4 C 1.53992 * 109.91587 * 121.20423 * 2 1 3 5 5 C 1.54600 * 105.14179 * 120.58084 * 4 2 1 6 6 N 1.46902 * 110.71936 * 263.60312 * 5 4 2 7 7 C 1.50696 * 110.72878 * 140.49304 * 5 4 2 8 8 H 1.07996 * 119.99843 * 245.31593 * 7 5 4 9 9 C 1.37876 * 120.00210 * 65.31211 * 7 5 4 10 10 N 1.31512 * 120.00424 * 191.51607 * 9 7 5 11 11 Si 1.86806 * 119.99566 * 11.51680 * 9 7 5 12 12 H 1.48493 * 109.47208 * 84.47836 * 11 9 7 13 13 H 1.48500 * 109.46793 * 204.47443 * 11 9 7 14 14 H 1.48501 * 109.47014 * 324.47343 * 11 9 7 15 15 C 1.54937 * 102.91924 * 21.95390 * 5 4 2 16 16 N 1.47895 * 109.91978 * 238.79448 * 2 1 3 17 17 C 1.46905 * 111.00170 * 94.80118 * 16 2 1 18 18 H 1.08999 * 109.46808 * 298.79595 * 1 2 3 19 19 H 1.08994 * 109.46819 * 58.79477 * 1 2 3 20 20 H 1.08992 * 109.47021 * 178.79876 * 1 2 3 21 21 H 1.09005 * 110.31208 * 239.49289 * 4 2 1 22 22 H 1.09001 * 110.31262 * 1.56440 * 4 2 1 23 23 H 1.00901 * 110.99347 * 186.18962 * 6 5 4 24 24 H 1.00903 * 110.99796 * 310.13622 * 6 5 4 25 25 H 0.96992 * 120.00040 * 180.02562 * 10 9 7 26 26 H 1.09004 * 110.66801 * 81.02084 * 15 5 4 27 27 H 1.09002 * 110.66669 * 203.98988 * 15 5 4 28 28 H 1.09001 * 109.46596 * 60.00200 * 17 16 2 29 29 H 1.08997 * 109.47293 * 180.02562 * 17 16 2 30 30 H 1.08999 * 109.47183 * 300.00292 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0546 -0.7501 1.2384 5 6 2.9060 -1.9117 0.6763 6 7 2.1181 -3.1500 0.6125 7 6 4.1471 -2.1137 1.5067 8 1 5.1206 -1.9322 1.0757 9 6 4.0400 -2.5301 2.8167 10 7 5.0900 -2.4902 3.6075 11 14 2.4031 -3.1512 3.4683 12 1 2.2520 -4.5905 3.1360 13 1 2.3586 -2.9761 4.9423 14 1 1.2975 -2.3804 2.8447 15 6 3.2682 -1.4185 -0.7471 16 7 2.0339 -0.7204 -1.1893 17 6 2.3212 0.2123 -2.2873 18 1 -0.3633 0.4950 0.9006 19 1 -0.3633 0.5324 -0.8789 20 1 -0.3633 -1.0274 -0.0215 21 1 2.6714 -0.0895 1.8478 22 1 1.2227 -1.1386 1.8259 23 1 2.6954 -3.9322 0.3423 24 1 1.6544 -3.3291 1.4906 25 1 5.0146 -2.7835 4.5289 26 1 4.1098 -0.7266 -0.7120 27 1 3.4917 -2.2614 -1.4011 28 1 3.0772 0.9291 -1.9666 29 1 2.6897 -0.3437 -3.1493 30 1 1.4095 0.7435 -2.5607 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260559189.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:59 Heat of formation + Delta-G solvation = -4.600047 kcal Electronic energy + Delta-G solvation = -12046.534976 eV Core-core repulsion = 10069.097815 eV Total energy + Delta-G solvation = -1977.437161 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.28067 -36.01739 -33.81712 -32.57601 -29.84586 -27.49953 -26.82584 -24.69865 -21.30263 -20.99285 -18.59795 -17.32114 -16.45743 -16.10923 -15.81505 -15.48512 -14.73616 -14.45111 -14.02534 -13.36398 -13.16615 -13.00805 -12.83216 -12.60651 -12.40408 -12.14749 -11.91707 -11.70300 -11.35166 -10.99348 -10.68487 -9.27074 -9.18508 -8.41045 -6.45597 1.25773 1.27274 1.39115 2.21865 2.91297 3.23554 3.90458 3.92124 4.03578 4.30675 4.55921 4.56350 4.65558 4.72496 4.92365 4.96108 4.99708 5.06355 5.13143 5.25810 5.34368 5.51638 5.52600 6.01559 6.04608 6.34370 6.55835 6.62127 6.79096 7.21827 8.75199 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.052651 B = 0.016158 C = 0.014392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.677328 B = 1732.433121 C = 1945.116721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.066 3.934 3 H 0.046 0.954 4 C -0.128 4.128 5 C 0.206 3.794 6 N -0.824 5.824 7 C -0.548 4.548 8 H 0.030 0.970 9 C 0.023 3.977 10 N -0.938 5.938 11 Si 0.925 3.075 12 H -0.266 1.266 13 H -0.305 1.305 14 H -0.218 1.218 15 C 0.069 3.931 16 N -0.513 5.513 17 C 0.016 3.984 18 H 0.062 0.938 19 H 0.064 0.936 20 H 0.053 0.947 21 H 0.047 0.953 22 H 0.071 0.929 23 H 0.335 0.665 24 H 0.314 0.686 25 H 0.266 0.734 26 H 0.025 0.975 27 H 0.072 0.928 28 H 0.019 0.981 29 H 0.073 0.927 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.346 3.722 -6.826 12.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.043 4.043 3 H 0.064 0.936 4 C -0.167 4.167 5 C 0.114 3.886 6 N -0.359 5.359 7 C -0.588 4.588 8 H 0.049 0.951 9 C -0.177 4.177 10 N -0.577 5.577 11 Si 0.753 3.247 12 H -0.192 1.192 13 H -0.233 1.233 14 H -0.142 1.142 15 C -0.060 4.060 16 N -0.237 5.237 17 C -0.133 4.133 18 H 0.081 0.919 19 H 0.083 0.917 20 H 0.072 0.928 21 H 0.066 0.934 22 H 0.089 0.911 23 H 0.147 0.853 24 H 0.132 0.868 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.090 0.910 28 H 0.038 0.962 29 H 0.091 0.909 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.097 3.716 -7.443 13.083 hybrid contribution 1.474 -0.132 1.781 2.316 sum -8.623 3.584 -5.662 10.920 Atomic orbital electron populations 1.21649 0.92706 1.02026 1.01594 1.22375 0.97164 0.95003 0.89744 0.93635 1.22990 0.98910 0.97564 0.97224 1.19478 0.88995 0.88054 0.92086 1.59447 1.35296 1.05839 1.35352 1.21816 0.93565 1.46333 0.97038 0.95121 1.25828 1.00095 0.95072 0.96666 1.70094 1.32761 1.47882 1.06937 0.86466 0.81666 0.80170 0.76395 1.19203 1.23324 1.14227 1.22904 0.90157 0.97069 0.95828 1.64670 1.26236 1.26032 1.06786 1.22583 1.00813 0.95120 0.94779 0.91902 0.91713 0.92789 0.93449 0.91111 0.85260 0.86804 0.92469 0.95666 0.90991 0.96203 0.90851 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.54 9.32 71.98 0.67 -2.87 16 2 C 0.07 2.30 3.09 45.06 0.14 2.44 16 3 H 0.05 1.53 7.73 -2.39 -0.02 1.51 16 4 C -0.13 -5.40 4.69 31.47 0.15 -5.26 16 5 C 0.21 9.42 0.77 3.99 0.00 9.42 16 6 N -0.82 -35.00 8.56 -149.75 -1.28 -36.28 16 7 C -0.55 -30.57 8.59 25.60 0.22 -30.35 16 8 H 0.03 1.92 8.02 -2.91 -0.02 1.90 16 9 C 0.02 1.28 5.41 84.65 0.46 1.74 16 10 N -0.94 -57.71 13.96 21.45 0.30 -57.41 16 11 Si 0.93 42.22 24.14 68.60 1.66 43.87 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 13 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 14 H -0.22 -8.96 3.94 99.48 0.39 -8.57 16 15 C 0.07 2.85 5.66 86.65 0.49 3.34 16 16 N -0.51 -18.22 5.18 -884.07 -4.58 -22.80 16 17 C 0.02 0.44 9.40 127.69 1.20 1.64 16 18 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 19 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 20 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 21 H 0.05 2.15 7.84 -2.38 -0.02 2.13 16 22 H 0.07 2.91 5.03 -2.39 -0.01 2.90 16 23 H 0.34 13.96 8.94 -89.69 -0.80 13.16 16 24 H 0.31 13.16 3.65 -89.69 -0.33 12.83 16 25 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 26 H 0.03 1.09 7.87 -2.39 -0.02 1.08 16 27 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 28 H 0.02 0.56 8.00 -2.39 -0.02 0.54 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -62.36 231.17 -0.90 -63.26 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: -0.32 Total: 29.25 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 3.33 Total: -19.90 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -5.57 Total: -116.49 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.66 Total: 43.87 kcal Total: -62.36 -0.90 -63.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260559189.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.662 kcal (2) G-P(sol) polarization free energy of solvation -62.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds