Wall clock time and date at job start Mon Mar 30 2020 02:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.36178 * 2 1 4 4 C 1.54380 * 110.41339 * 237.52685 * 2 1 3 5 5 C 1.54260 * 105.05884 * 217.36503 * 4 2 1 6 6 N 1.46908 * 110.40928 * 118.93658 * 5 4 2 7 7 C 1.50694 * 110.32325 * 241.10141 * 5 4 2 8 8 H 1.08000 * 120.00563 * 357.09084 * 7 5 4 9 9 C 1.37885 * 119.99902 * 177.09248 * 7 5 4 10 10 N 1.31516 * 119.99913 * 359.97438 * 9 7 5 11 11 Si 1.86798 * 119.99766 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47353 * 269.99586 * 11 9 7 13 13 H 1.48501 * 109.47293 * 30.00037 * 11 9 7 14 14 H 1.48504 * 109.46680 * 149.99835 * 11 9 7 15 15 C 1.54377 * 105.06018 * 0.02562 * 5 4 2 16 16 N 1.48553 * 110.41405 * 122.34788 * 2 1 3 17 17 C 1.46903 * 111.00077 * 277.82145 * 16 2 1 18 18 H 1.08993 * 109.47187 * 299.10126 * 1 2 3 19 19 H 1.09007 * 109.47138 * 59.10399 * 1 2 3 20 20 H 1.09007 * 109.46941 * 179.10159 * 1 2 3 21 21 H 1.08996 * 110.32547 * 98.46698 * 4 2 1 22 22 H 1.08998 * 110.32053 * 336.26060 * 4 2 1 23 23 H 1.00897 * 110.99499 * 181.48234 * 6 5 4 24 24 H 1.00894 * 110.99832 * 305.43911 * 6 5 4 25 25 H 0.97001 * 119.99646 * 179.97438 * 10 9 7 26 26 H 1.08998 * 110.41500 * 142.63316 * 15 5 4 27 27 H 1.09011 * 110.40884 * 264.95213 * 15 5 4 28 28 H 1.08991 * 109.47014 * 304.70813 * 17 16 2 29 29 H 1.08998 * 109.46956 * 64.70723 * 17 16 2 30 30 H 1.09000 * 109.46692 * 184.70194 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0685 -0.7768 -1.2206 5 6 3.3179 -1.5195 -0.7037 6 7 3.1429 -2.9718 -0.8386 7 6 4.5433 -1.0687 -1.4561 8 1 4.4500 -0.3584 -2.2643 9 6 5.7838 -1.5631 -1.1127 10 7 5.8975 -2.4278 -0.1282 11 14 7.3027 -1.0049 -2.0458 12 1 7.5360 -1.9109 -3.1990 13 1 7.0994 0.3812 -2.5384 14 1 8.4801 -1.0412 -1.1416 15 6 3.4287 -1.1294 0.7858 16 7 2.0482 -0.7449 1.1762 17 6 2.0569 0.1041 2.3750 18 1 -0.3633 0.4998 0.8979 19 1 -0.3634 0.5277 -0.8819 20 1 -0.3633 -1.0276 -0.0161 21 1 2.3416 -0.0863 -2.0185 22 1 1.3236 -1.4897 -1.5743 23 1 3.9455 -3.4674 -0.4807 24 1 2.2962 -3.2778 -0.3831 25 1 6.7702 -2.7758 0.1131 26 1 3.7687 -1.9796 1.3772 27 1 4.1085 -0.2860 0.9083 28 1 2.6261 1.0114 2.1734 29 1 1.0333 0.3687 2.6402 30 1 2.5176 -0.4381 3.2008 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260559219.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:02 Heat of formation + Delta-G solvation = -0.454894 kcal Electronic energy + Delta-G solvation = -11961.520544 eV Core-core repulsion = 9984.263131 eV Total energy + Delta-G solvation = -1977.257413 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.41956 -33.91725 -31.42482 -30.82456 -27.70370 -25.61157 -24.96527 -22.89557 -19.46212 -19.00202 -16.44594 -14.89471 -14.60014 -14.12360 -13.78682 -13.50138 -13.04205 -12.53200 -12.08344 -11.76184 -11.34610 -11.16833 -11.10391 -10.89961 -10.47459 -10.41672 -10.19206 -10.01090 -9.41092 -9.00376 -8.58483 -7.67194 -6.94016 -6.08049 -4.10097 3.29604 3.36230 3.39043 4.40436 4.85162 5.21419 5.54884 5.64247 5.82708 5.93858 6.01294 6.18607 6.27098 6.31675 6.43192 6.47250 6.63505 6.85445 7.01053 7.04816 7.12554 7.47445 7.67905 7.86384 7.93763 8.32970 8.77031 9.11023 9.32890 9.57714 11.01874 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.054887 B = 0.013446 C = 0.012960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.018201 B = 2081.906842 C = 2159.932431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 H 0.040 0.960 4 C -0.106 4.106 5 C 0.245 3.755 6 N -0.837 5.837 7 C -0.498 4.498 8 H 0.059 0.941 9 C 0.069 3.931 10 N -0.896 5.896 11 Si 0.895 3.105 12 H -0.279 1.279 13 H -0.275 1.275 14 H -0.288 1.288 15 C 0.030 3.970 16 N -0.523 5.523 17 C 0.018 3.982 18 H 0.043 0.957 19 H 0.050 0.950 20 H 0.059 0.941 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.354 0.646 24 H 0.300 0.700 25 H 0.262 0.738 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.019 0.981 29 H 0.055 0.945 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.880 3.552 2.216 7.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.054 4.054 3 H 0.058 0.942 4 C -0.145 4.145 5 C 0.152 3.848 6 N -0.367 5.367 7 C -0.537 4.537 8 H 0.077 0.923 9 C -0.133 4.133 10 N -0.535 5.535 11 Si 0.723 3.277 12 H -0.205 1.205 13 H -0.200 1.200 14 H -0.214 1.214 15 C -0.099 4.099 16 N -0.248 5.248 17 C -0.131 4.131 18 H 0.062 0.938 19 H 0.069 0.931 20 H 0.078 0.922 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.171 0.829 24 H 0.109 0.891 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.053 0.947 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.077 3.117 1.662 7.029 hybrid contribution 1.548 1.060 0.616 1.975 sum -4.529 4.177 2.277 6.569 Atomic orbital electron populations 1.21696 0.95296 1.01751 1.00120 1.22636 0.94510 0.95799 0.92415 0.94199 1.22483 0.98347 0.98260 0.95409 1.18983 0.91429 0.85702 0.88664 1.59317 1.06657 1.06435 1.64284 1.21141 0.90515 1.24910 1.17170 0.92328 1.24990 0.98977 0.94595 0.94730 1.69730 1.24289 1.30921 1.28602 0.86545 0.82315 0.79023 0.79779 1.20547 1.20048 1.21378 1.23983 0.85471 0.99671 1.00776 1.65399 1.21697 1.35452 1.02227 1.22411 1.00230 0.95700 0.94783 0.93799 0.93054 0.92222 0.92251 0.92192 0.82917 0.89068 0.92809 0.91128 0.94743 0.96217 0.92623 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.35 37.16 0.35 -1.71 16 2 C 0.06 1.06 2.89 -66.07 -0.19 0.87 16 3 H 0.04 0.78 7.90 -51.93 -0.41 0.37 16 4 C -0.11 -2.31 5.92 -25.35 -0.15 -2.46 16 5 C 0.24 6.06 0.89 -131.37 -0.12 5.94 16 6 N -0.84 -20.52 8.81 0.93 0.01 -20.51 16 7 C -0.50 -13.63 8.09 -34.44 -0.28 -13.91 16 8 H 0.06 1.61 7.36 -52.49 -0.39 1.22 16 9 C 0.07 1.87 5.24 -17.82 -0.09 1.78 16 10 N -0.90 -24.61 10.66 55.43 0.59 -24.02 16 11 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 C 0.03 0.73 4.75 -2.20 -0.01 0.72 16 16 N -0.52 -10.67 5.34 -230.37 -1.23 -11.90 16 17 C 0.02 0.32 9.42 60.07 0.57 0.88 16 18 H 0.04 0.63 7.54 -51.93 -0.39 0.24 16 19 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 20 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 21 H 0.06 1.29 7.43 -51.93 -0.39 0.91 16 22 H 0.06 1.26 7.63 -51.93 -0.40 0.86 16 23 H 0.35 9.25 7.08 -39.29 -0.28 8.97 16 24 H 0.30 6.77 8.97 -39.29 -0.35 6.42 16 25 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.07 1.81 7.85 -51.93 -0.41 1.40 16 27 H 0.03 0.89 7.69 -51.92 -0.40 0.49 16 28 H 0.02 0.34 7.97 -51.93 -0.41 -0.07 16 29 H 0.05 0.85 7.54 -51.93 -0.39 0.45 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 239.87 15.07 3.61 3.61 Total: -1.00 -27.36 239.87 -6.58 -33.94 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -4.61 Total: 10.55 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 0.07 Total: -7.89 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.63 Total: -56.43 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -27.36 -6.58 -33.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260559219.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.481 kcal (2) G-P(sol) polarization free energy of solvation -27.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds