Wall clock time and date at job start Mon Mar 30 2020 02:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.36178 * 2 1 4 4 C 1.54380 * 110.41339 * 237.52685 * 2 1 3 5 5 C 1.54260 * 105.05884 * 217.36503 * 4 2 1 6 6 N 1.46908 * 110.40928 * 118.93658 * 5 4 2 7 7 C 1.50694 * 110.32325 * 241.10141 * 5 4 2 8 8 H 1.08000 * 120.00563 * 357.09084 * 7 5 4 9 9 C 1.37885 * 119.99902 * 177.09248 * 7 5 4 10 10 N 1.31516 * 119.99913 * 359.97438 * 9 7 5 11 11 Si 1.86798 * 119.99766 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47353 * 269.99586 * 11 9 7 13 13 H 1.48501 * 109.47293 * 30.00037 * 11 9 7 14 14 H 1.48504 * 109.46680 * 149.99835 * 11 9 7 15 15 C 1.54377 * 105.06018 * 0.02562 * 5 4 2 16 16 N 1.48553 * 110.41405 * 122.34788 * 2 1 3 17 17 C 1.46903 * 111.00077 * 277.82145 * 16 2 1 18 18 H 1.08993 * 109.47187 * 299.10126 * 1 2 3 19 19 H 1.09007 * 109.47138 * 59.10399 * 1 2 3 20 20 H 1.09007 * 109.46941 * 179.10159 * 1 2 3 21 21 H 1.08996 * 110.32547 * 98.46698 * 4 2 1 22 22 H 1.08998 * 110.32053 * 336.26060 * 4 2 1 23 23 H 1.00897 * 110.99499 * 181.48234 * 6 5 4 24 24 H 1.00894 * 110.99832 * 305.43911 * 6 5 4 25 25 H 0.97001 * 119.99646 * 179.97438 * 10 9 7 26 26 H 1.08998 * 110.41500 * 142.63316 * 15 5 4 27 27 H 1.09011 * 110.40884 * 264.95213 * 15 5 4 28 28 H 1.08991 * 109.47014 * 304.70813 * 17 16 2 29 29 H 1.08998 * 109.46956 * 64.70723 * 17 16 2 30 30 H 1.09000 * 109.46692 * 184.70194 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0685 -0.7768 -1.2206 5 6 3.3179 -1.5195 -0.7037 6 7 3.1429 -2.9718 -0.8386 7 6 4.5433 -1.0687 -1.4561 8 1 4.4500 -0.3584 -2.2643 9 6 5.7838 -1.5631 -1.1127 10 7 5.8975 -2.4278 -0.1282 11 14 7.3027 -1.0049 -2.0458 12 1 7.5360 -1.9109 -3.1990 13 1 7.0994 0.3812 -2.5384 14 1 8.4801 -1.0412 -1.1416 15 6 3.4287 -1.1294 0.7858 16 7 2.0482 -0.7449 1.1762 17 6 2.0569 0.1041 2.3750 18 1 -0.3633 0.4998 0.8979 19 1 -0.3634 0.5277 -0.8819 20 1 -0.3633 -1.0276 -0.0161 21 1 2.3416 -0.0863 -2.0185 22 1 1.3236 -1.4897 -1.5743 23 1 3.9455 -3.4674 -0.4807 24 1 2.2962 -3.2778 -0.3831 25 1 6.7702 -2.7758 0.1131 26 1 3.7687 -1.9796 1.3772 27 1 4.1085 -0.2860 0.9083 28 1 2.6261 1.0114 2.1734 29 1 1.0333 0.3687 2.6402 30 1 2.5176 -0.4381 3.2008 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260559219.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:02 Heat of formation + Delta-G solvation = -20.918323 kcal Electronic energy + Delta-G solvation = -11962.407905 eV Core-core repulsion = 9984.263131 eV Total energy + Delta-G solvation = -1978.144774 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.13675 -35.77938 -33.32381 -32.42896 -29.48938 -27.48622 -26.62638 -24.58571 -21.13494 -20.82325 -18.41770 -16.85584 -16.25952 -15.89493 -15.43398 -15.32909 -14.66997 -14.20454 -13.70009 -13.46996 -12.97518 -12.85159 -12.79877 -12.67048 -12.35550 -12.03294 -11.89167 -11.64918 -11.36393 -10.88046 -10.64894 -9.34460 -8.89437 -8.14047 -6.22982 1.40277 1.42472 1.50678 2.42418 3.11683 3.29691 4.00823 4.12945 4.32870 4.44178 4.55590 4.64498 4.74204 4.84750 4.92444 4.96079 5.02324 5.16981 5.18933 5.30394 5.48637 5.58201 5.79613 5.95239 6.29153 6.33132 6.71549 7.09856 7.36478 7.48466 8.93789 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.054887 B = 0.013446 C = 0.012960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.018201 B = 2081.906842 C = 2159.932431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.057 3.943 3 H 0.037 0.963 4 C -0.104 4.104 5 C 0.231 3.769 6 N -0.837 5.837 7 C -0.523 4.523 8 H 0.049 0.951 9 C 0.027 3.973 10 N -0.912 5.912 11 Si 0.953 3.047 12 H -0.278 1.278 13 H -0.273 1.273 14 H -0.284 1.284 15 C 0.048 3.952 16 N -0.524 5.524 17 C 0.017 3.983 18 H 0.062 0.938 19 H 0.070 0.930 20 H 0.057 0.943 21 H 0.052 0.948 22 H 0.066 0.934 23 H 0.343 0.657 24 H 0.310 0.690 25 H 0.262 0.738 26 H 0.047 0.953 27 H 0.005 0.995 28 H 0.017 0.983 29 H 0.086 0.914 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.872 4.250 2.303 8.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.052 4.052 3 H 0.055 0.945 4 C -0.142 4.142 5 C 0.138 3.862 6 N -0.367 5.367 7 C -0.562 4.562 8 H 0.067 0.933 9 C -0.173 4.173 10 N -0.552 5.552 11 Si 0.779 3.221 12 H -0.204 1.204 13 H -0.197 1.197 14 H -0.209 1.209 15 C -0.082 4.082 16 N -0.249 5.249 17 C -0.132 4.132 18 H 0.081 0.919 19 H 0.089 0.911 20 H 0.076 0.924 21 H 0.071 0.929 22 H 0.085 0.915 23 H 0.158 0.842 24 H 0.121 0.879 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.024 0.976 28 H 0.035 0.965 29 H 0.105 0.895 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.094 3.825 1.751 8.247 hybrid contribution 1.836 0.843 0.603 2.108 sum -5.258 4.667 2.354 7.414 Atomic orbital electron populations 1.21631 0.91960 1.02290 1.02050 1.22696 0.97021 0.94845 0.90615 0.94517 1.22425 0.97231 0.98217 0.96363 1.19101 0.92098 0.85949 0.89055 1.59277 1.06647 1.06423 1.64347 1.21438 0.92109 1.25221 1.17456 0.93263 1.25643 1.01396 0.94744 0.95499 1.69828 1.24724 1.31336 1.29268 0.85643 0.79234 0.78610 0.78589 1.20379 1.19736 1.20947 1.23571 0.87002 0.97562 1.00057 1.65382 1.18966 1.36929 1.03608 1.22501 1.02199 0.95064 0.93434 0.91930 0.91130 0.92354 0.92926 0.91539 0.84164 0.87911 0.92830 0.93495 0.97618 0.96451 0.89543 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.40 9.35 71.98 0.67 -2.73 16 2 C 0.06 2.08 2.89 45.06 0.13 2.21 16 3 H 0.04 1.37 7.90 -2.39 -0.02 1.35 16 4 C -0.10 -4.41 5.92 31.49 0.19 -4.22 16 5 C 0.23 11.44 0.89 3.67 0.00 11.45 16 6 N -0.84 -41.15 8.81 -150.97 -1.33 -42.48 16 7 C -0.52 -28.90 8.09 25.60 0.21 -28.69 16 8 H 0.05 2.73 7.36 -2.91 -0.02 2.71 16 9 C 0.03 1.48 5.24 84.66 0.44 1.92 16 10 N -0.91 -50.62 10.66 21.45 0.23 -50.39 16 11 Si 0.95 43.72 29.54 68.60 2.03 45.74 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 14 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 15 C 0.05 2.33 4.75 86.45 0.41 2.74 16 16 N -0.52 -20.64 5.34 -882.77 -4.71 -25.35 16 17 C 0.02 0.55 9.42 127.69 1.20 1.75 16 18 H 0.06 1.53 7.54 -2.39 -0.02 1.51 16 19 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 20 H 0.06 1.66 8.12 -2.38 -0.02 1.64 16 21 H 0.05 2.26 7.43 -2.39 -0.02 2.24 16 22 H 0.07 2.69 7.63 -2.39 -0.02 2.67 16 23 H 0.34 18.15 7.08 -89.70 -0.63 17.51 16 24 H 0.31 13.89 8.97 -89.70 -0.80 13.09 16 25 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 26 H 0.05 2.45 7.85 -2.39 -0.02 2.43 16 27 H 0.01 0.29 7.69 -2.38 -0.02 0.27 16 28 H 0.02 0.57 7.97 -2.39 -0.02 0.55 16 29 H 0.09 2.31 7.54 -2.39 -0.02 2.30 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -57.56 239.87 -0.85 -58.40 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: -0.32 Total: 29.64 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 3.26 Total: -15.57 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -5.82 Total: -118.22 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -57.56 -0.85 -58.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260559219.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.485 kcal (2) G-P(sol) polarization free energy of solvation -57.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds