Wall clock time and date at job start Mon Mar 30 2020 01:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47491 * 2 1 4 4 H 1.08999 * 109.47497 * 178.31026 * 3 2 1 5 5 C 1.50699 * 109.47026 * 58.30823 * 3 2 1 6 6 H 1.08005 * 120.00324 * 239.99699 * 5 3 2 7 7 C 1.37872 * 120.00075 * 60.00440 * 5 3 2 8 8 N 1.31517 * 119.99850 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00256 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46898 * 89.99591 * 9 7 5 11 11 H 1.48492 * 109.46974 * 209.99830 * 9 7 5 12 12 H 1.48502 * 109.46787 * 329.99755 * 9 7 5 13 13 C 1.53007 * 109.47001 * 298.30985 * 3 2 1 14 14 H 1.09003 * 110.45604 * 62.46048 * 13 3 2 15 15 C 1.54506 * 110.50828 * 185.06133 * 13 3 2 16 16 C 1.54481 * 104.06274 * 118.78515 * 15 13 3 17 17 O 1.44430 * 104.80259 * 23.97382 * 16 15 13 18 18 C 1.44424 * 105.27367 * 319.49423 * 17 16 15 19 19 H 1.08998 * 109.47485 * 185.26824 * 1 2 3 20 20 H 1.09003 * 109.46947 * 305.26949 * 1 2 3 21 21 H 1.09001 * 109.47066 * 65.26794 * 1 2 3 22 22 H 1.09002 * 109.47066 * 239.99802 * 2 1 3 23 23 H 1.09002 * 109.47185 * 120.00008 * 2 1 3 24 24 H 0.96997 * 119.99720 * 180.02562 * 8 7 5 25 25 H 1.09011 * 110.51154 * 237.42578 * 15 13 3 26 26 H 1.08993 * 110.51531 * 0.13776 * 15 13 3 27 27 H 1.08999 * 110.37459 * 142.80508 * 16 15 13 28 28 H 1.09001 * 110.37391 * 265.14820 * 16 15 13 29 29 H 1.09004 * 110.36805 * 281.67594 * 18 17 16 30 30 H 1.08999 * 110.36928 * 159.34473 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1296 1.4425 0.0303 5 6 1.5038 2.1648 1.2090 6 1 0.8861 3.0419 1.0840 7 6 1.8019 1.7062 2.4745 8 7 2.5538 0.6379 2.6267 9 14 1.1378 2.6021 3.9732 10 1 -0.1814 2.0315 4.3466 11 1 2.0849 2.4419 5.1056 12 1 0.9819 4.0450 3.6585 13 6 1.5651 2.1513 -1.2700 14 1 0.4764 2.1987 -1.2954 15 6 2.1710 3.5699 -1.3569 16 6 3.0054 3.5428 -2.6567 17 8 2.4091 2.4983 -3.4563 18 6 2.1051 1.4348 -2.5275 19 1 -0.3634 -1.0233 0.0944 20 1 -0.3633 0.5934 0.8391 21 1 -0.3633 0.4300 -0.9334 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 2.7632 0.3151 3.5171 25 1 1.3818 4.3188 -1.4252 26 1 2.8107 3.7654 -0.4964 27 1 2.9367 4.5010 -3.1718 28 1 4.0455 3.3039 -2.4350 29 1 3.0072 0.8727 -2.2860 30 1 1.3449 0.7736 -2.9434 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260595219.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:12 Heat of formation + Delta-G solvation = -68.762997 kcal Electronic energy + Delta-G solvation = -11849.637573 eV Core-core repulsion = 9837.125347 eV Total energy + Delta-G solvation = -2012.512226 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.87115 -35.24398 -31.76591 -30.56477 -28.21564 -26.39397 -23.48133 -22.33341 -20.60883 -18.54906 -16.19635 -15.66450 -15.14217 -14.56858 -14.29582 -13.32295 -12.97829 -12.37964 -12.19035 -11.84083 -11.39383 -10.92724 -10.79708 -10.63452 -10.48007 -10.47522 -10.08383 -9.63230 -9.41105 -9.22702 -8.94413 -8.67089 -8.30485 -5.97758 -4.02586 3.29450 3.36936 3.39479 4.43296 4.60272 5.32531 5.45065 5.55907 5.69981 5.86803 6.01654 6.26516 6.35419 6.39070 6.48220 6.53277 6.65409 6.80339 6.85871 6.95915 7.10664 7.38702 7.50664 7.55536 7.76517 7.92545 8.15607 8.46154 8.99641 9.60886 11.07995 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.048527 B = 0.013673 C = 0.011908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.857183 B = 2047.348033 C = 2350.740341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.117 4.117 3 C 0.057 3.943 4 H 0.025 0.975 5 C -0.502 4.502 6 H 0.054 0.946 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.885 3.115 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C -0.107 4.107 14 H 0.069 0.931 15 C -0.142 4.142 16 C 0.044 3.956 17 O -0.392 6.392 18 C 0.047 3.953 19 H 0.021 0.979 20 H 0.063 0.937 21 H 0.029 0.971 22 H 0.014 0.986 23 H 0.089 0.911 24 H 0.259 0.741 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.778 2.169 -5.558 6.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.155 4.155 3 C 0.039 3.961 4 H 0.043 0.957 5 C -0.541 4.541 6 H 0.072 0.928 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C -0.126 4.126 14 H 0.088 0.912 15 C -0.180 4.180 16 C -0.033 4.033 17 O -0.312 6.312 18 C -0.029 4.029 19 H 0.040 0.960 20 H 0.082 0.918 21 H 0.048 0.952 22 H 0.033 0.967 23 H 0.107 0.893 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.735 2.061 -5.643 6.052 hybrid contribution -0.347 0.411 1.179 1.296 sum -1.082 2.473 -4.464 5.216 Atomic orbital electron populations 1.21655 0.98135 0.98467 1.00670 1.21551 0.94318 0.99513 1.00153 1.18750 0.95889 0.91521 0.89963 0.95661 1.21091 1.31065 1.11557 0.90364 0.92770 1.24932 0.95195 0.95026 0.98771 1.69876 1.37544 1.23176 1.22329 0.86696 0.78761 0.80224 0.82943 1.20793 1.21365 1.20003 1.22626 1.00129 0.93788 0.96059 0.91224 1.22905 0.99536 0.98118 0.97427 1.23410 0.96653 0.91140 0.92095 1.88992 1.81369 1.28299 1.32517 1.23604 0.99403 0.90181 0.89719 0.95958 0.91798 0.95177 0.96733 0.89262 0.93116 0.92251 0.89610 0.90356 0.92955 0.92590 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.30 37.16 0.35 -2.47 16 2 C -0.12 -2.72 5.28 -26.73 -0.14 -2.86 16 3 C 0.06 1.36 1.37 -91.77 -0.13 1.24 16 4 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.50 -13.09 6.40 -34.44 -0.22 -13.31 16 6 H 0.05 1.41 7.64 -52.48 -0.40 1.01 16 7 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 8 N -0.89 -24.87 11.34 55.43 0.63 -24.24 16 9 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 C -0.11 -2.20 2.21 -89.05 -0.20 -2.40 16 14 H 0.07 1.45 6.79 -51.93 -0.35 1.10 16 15 C -0.14 -2.67 6.29 -25.16 -0.16 -2.83 16 16 C 0.04 0.74 7.63 37.93 0.29 1.03 16 17 O -0.39 -7.43 11.65 -35.23 -0.41 -7.84 16 18 C 0.05 0.89 6.09 37.93 0.23 1.12 16 19 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 20 H 0.06 1.48 6.98 -51.93 -0.36 1.12 16 21 H 0.03 0.58 6.82 -51.93 -0.35 0.23 16 22 H 0.01 0.30 7.08 -51.93 -0.37 -0.07 16 23 H 0.09 2.33 6.11 -51.93 -0.32 2.01 16 24 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 26 H 0.09 1.72 7.40 -51.93 -0.38 1.33 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.06 1.06 7.66 -51.93 -0.40 0.66 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 237.37 15.07 3.58 3.58 Total: -1.00 -27.31 237.37 -5.91 -33.22 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -4.61 Total: -1.69 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -0.07 Total: -18.92 kcal Atomic # 7 Polarization: -24.87 SS G_CDS: 0.63 Total: -24.24 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.41 Total: -7.84 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -27.31 -5.91 -33.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260595219.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.543 kcal (2) G-P(sol) polarization free energy of solvation -27.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds