Wall clock time and date at job start Mon Mar 30 2020 01:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46939 * 2 1 4 4 H 1.08999 * 109.47803 * 305.52353 * 3 2 1 5 5 C 1.50698 * 109.46959 * 65.53103 * 3 2 1 6 6 H 1.08000 * 120.00602 * 55.37427 * 5 3 2 7 7 C 1.37879 * 119.99786 * 235.37452 * 5 3 2 8 8 N 1.31519 * 119.99992 * 5.71840 * 7 5 3 9 9 Si 1.86806 * 120.00122 * 185.71437 * 7 5 3 10 10 H 1.48498 * 109.46797 * 60.00288 * 9 7 5 11 11 H 1.48503 * 109.47054 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46808 * 299.99796 * 9 7 5 13 13 C 1.53009 * 109.46980 * 185.52452 * 3 2 1 14 14 H 1.08992 * 110.75214 * 297.98482 * 13 3 2 15 15 C 1.55564 * 111.01015 * 174.40795 * 13 3 2 16 16 C 1.54948 * 100.82317 * 207.60705 * 15 13 3 17 17 O 1.43638 * 105.22161 * 36.44491 * 16 15 13 18 18 C 1.43233 * 109.97410 * 335.51954 * 17 16 15 19 19 H 1.09004 * 109.47279 * 54.41501 * 1 2 3 20 20 H 1.08998 * 109.47174 * 174.41774 * 1 2 3 21 21 H 1.09003 * 109.47076 * 294.41277 * 1 2 3 22 22 H 1.09001 * 109.46820 * 240.00318 * 2 1 3 23 23 H 1.08995 * 109.46955 * 120.00566 * 2 1 3 24 24 H 0.97000 * 120.00150 * 180.02562 * 8 7 5 25 25 H 1.09003 * 111.22359 * 89.70974 * 15 13 3 26 26 H 1.08995 * 111.13999 * 325.46985 * 15 13 3 27 27 H 1.09004 * 110.30808 * 277.47436 * 16 15 13 28 28 H 1.09001 * 110.30725 * 155.41078 * 16 15 13 29 29 H 1.09000 * 109.82894 * 121.22763 * 18 17 16 30 30 H 1.09002 * 109.83561 * 242.10683 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5982 1.9842 -0.8363 5 6 1.6525 2.1122 1.2932 6 1 1.9379 1.6708 2.2367 7 6 0.9336 3.2885 1.2719 8 7 0.4892 3.7671 0.1303 9 14 0.5907 4.2026 2.8646 10 1 1.8761 4.5793 3.5056 11 1 -0.1953 5.4283 2.5725 12 1 -0.1819 3.3265 3.7816 13 6 3.5637 1.4447 -0.1389 14 1 4.0293 0.9384 0.7066 15 6 4.1084 2.8946 -0.2840 16 6 5.4039 2.6390 -1.0948 17 8 5.0782 1.5719 -1.9994 18 6 3.9948 0.7972 -1.4724 19 1 -0.3634 0.5980 -0.8358 20 1 -0.3633 -1.0228 -0.1000 21 1 -0.3633 0.4248 0.9358 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 -0.0162 4.5948 0.1153 25 1 4.3337 3.3308 0.6893 26 1 3.4131 3.5218 -0.8419 27 1 6.2132 2.3376 -0.4297 28 1 5.6851 3.5336 -1.6505 29 1 3.1602 0.8037 -2.1735 30 1 4.3232 -0.2275 -1.2983 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260595221.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:15 Heat of formation + Delta-G solvation = -87.838651 kcal Electronic energy + Delta-G solvation = -11791.016063 eV Core-core repulsion = 9777.676655 eV Total energy + Delta-G solvation = -2013.339408 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.29408 -36.84980 -33.75664 -32.47889 -30.12968 -28.18134 -25.26853 -23.35584 -22.00746 -20.70490 -18.71268 -17.11294 -16.85153 -16.32117 -15.58882 -15.07805 -14.53431 -14.14579 -13.98538 -13.56763 -12.95810 -12.94498 -12.78263 -12.31510 -12.23020 -12.16031 -11.71963 -11.60289 -11.11505 -10.82431 -10.68392 -10.43755 -10.35456 -8.05205 -6.10205 1.41611 1.43429 1.49389 2.46147 3.09335 3.23986 3.93669 4.11345 4.26255 4.42253 4.53632 4.56607 4.65681 4.80845 4.90477 4.93025 5.02298 5.18943 5.25738 5.33860 5.42201 5.53314 5.64104 5.74572 5.89413 5.98938 6.14131 6.47240 7.06107 7.53548 9.02895 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.037164 B = 0.015696 C = 0.012263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.229124 B = 1783.416110 C = 2282.703037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.109 4.109 3 C 0.037 3.963 4 H 0.036 0.964 5 C -0.507 4.507 6 H 0.045 0.955 7 C 0.026 3.974 8 N -0.921 5.921 9 Si 0.934 3.066 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.275 1.275 13 C -0.105 4.105 14 H 0.068 0.932 15 C -0.128 4.128 16 C 0.051 3.949 17 O -0.410 6.410 18 C 0.057 3.943 19 H 0.029 0.971 20 H 0.055 0.945 21 H 0.036 0.964 22 H 0.049 0.951 23 H 0.046 0.954 24 H 0.258 0.742 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.256 -3.576 -0.178 6.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.147 4.147 3 C 0.018 3.982 4 H 0.054 0.946 5 C -0.545 4.545 6 H 0.063 0.937 7 C -0.173 4.173 8 N -0.561 5.561 9 Si 0.761 3.239 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.200 1.200 13 C -0.124 4.124 14 H 0.086 0.914 15 C -0.166 4.166 16 C -0.024 4.024 17 O -0.330 6.330 18 C -0.020 4.020 19 H 0.048 0.952 20 H 0.074 0.926 21 H 0.055 0.945 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.251 -3.466 -0.440 6.307 hybrid contribution -0.631 0.854 1.045 1.490 sum 4.620 -2.612 0.605 5.341 Atomic orbital electron populations 1.21453 0.96751 0.99325 1.00505 1.21585 0.95720 0.98034 0.99339 1.18934 0.89478 0.92716 0.97081 0.94597 1.21190 1.33532 1.06998 0.92778 0.93704 1.25501 0.95507 0.98286 0.97991 1.70017 1.37980 1.21666 1.26437 0.85982 0.78266 0.78229 0.81401 1.19675 1.21584 1.20015 1.22836 0.99426 0.94585 0.95589 0.91398 1.22986 0.95891 0.97677 1.00069 1.23497 0.96710 0.90125 0.92117 1.88256 1.53265 1.44509 1.47020 1.23288 0.88624 0.94878 0.95164 0.95190 0.92561 0.94508 0.93225 0.93537 0.93304 0.91025 0.93159 0.90994 0.89181 0.92518 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.64 71.98 0.69 -4.34 16 2 C -0.11 -4.45 5.27 30.59 0.16 -4.29 16 3 C 0.04 1.73 1.49 -11.54 -0.02 1.71 16 4 H 0.04 1.95 6.91 -2.39 -0.02 1.93 16 5 C -0.51 -26.28 6.96 25.60 0.18 -26.11 16 6 H 0.04 2.33 7.82 -2.91 -0.02 2.31 16 7 C 0.03 1.38 5.45 84.65 0.46 1.84 16 8 N -0.92 -52.23 12.62 21.45 0.27 -51.96 16 9 Si 0.93 42.67 29.54 68.60 2.03 44.70 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 C -0.11 -4.31 2.51 -9.44 -0.02 -4.34 16 14 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 15 C -0.13 -5.19 6.18 32.14 0.20 -4.99 16 16 C 0.05 1.72 7.77 72.65 0.56 2.29 16 17 O -0.41 -15.43 11.36 -148.98 -1.69 -17.12 16 18 C 0.06 2.09 6.35 72.45 0.46 2.55 16 19 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 20 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 21 H 0.04 1.63 7.58 -2.39 -0.02 1.61 16 22 H 0.05 1.80 6.98 -2.39 -0.02 1.78 16 23 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 25 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 26 H 0.05 2.33 8.04 -2.39 -0.02 2.32 16 27 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 28 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.06 2.18 7.54 -2.39 -0.02 2.16 16 30 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -56.80 244.78 4.37 -52.44 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 1.08 Total: 7.62 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 2.68 Total: -35.68 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.27 Total: -51.96 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -1.69 Total: -17.12 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -56.80 4.37 -52.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260595221.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.400 kcal (2) G-P(sol) polarization free energy of solvation -56.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds