Wall clock time and date at job start Mon Mar 30 2020 01:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47197 * 2 1 4 4 H 1.09002 * 109.46912 * 305.53994 * 3 2 1 5 5 C 1.50702 * 109.46997 * 65.53979 * 3 2 1 6 6 H 1.07998 * 120.00094 * 58.07042 * 5 3 2 7 7 C 1.37882 * 119.99637 * 238.07180 * 5 3 2 8 8 N 1.31507 * 120.00395 * 6.48443 * 7 5 3 9 9 Si 1.86800 * 119.99506 * 186.48155 * 7 5 3 10 10 H 1.48501 * 109.47392 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47341 * 120.00123 * 9 7 5 12 12 H 1.48511 * 109.46985 * 240.00025 * 9 7 5 13 13 C 1.53001 * 109.47066 * 185.54094 * 3 2 1 14 14 H 1.08998 * 110.43288 * 301.08991 * 13 3 2 15 15 C 1.54805 * 110.48736 * 63.77947 * 13 3 2 16 16 C 1.54995 * 102.09152 * 139.55749 * 15 13 3 17 17 O 1.44380 * 103.49049 * 322.97669 * 16 15 13 18 18 C 1.43746 * 106.97589 * 40.05775 * 17 16 15 19 19 H 1.09007 * 109.47354 * 294.10260 * 1 2 3 20 20 H 1.08996 * 109.47752 * 54.10034 * 1 2 3 21 21 H 1.09004 * 109.47498 * 174.10674 * 1 2 3 22 22 H 1.09001 * 109.46782 * 240.00255 * 2 1 3 23 23 H 1.08997 * 109.47361 * 120.00196 * 2 1 3 24 24 H 0.97001 * 120.00067 * 180.02562 * 8 7 5 25 25 H 1.09001 * 110.90478 * 257.74915 * 15 13 3 26 26 H 1.08999 * 110.91011 * 21.35958 * 15 13 3 27 27 H 1.09004 * 110.61893 * 81.47605 * 16 15 13 28 28 H 1.09000 * 110.62115 * 204.47574 * 16 15 13 29 29 H 1.09000 * 109.87703 * 214.06457 * 18 17 16 30 30 H 1.09003 * 109.87402 * 92.91298 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5979 1.9841 -0.8362 5 6 1.6527 2.1122 1.2933 6 1 1.9754 1.6943 2.2355 7 6 0.8865 3.2583 1.2737 8 7 0.3869 3.6960 0.1386 9 14 0.5581 4.1894 2.8594 10 1 1.2268 3.4948 3.9889 11 1 1.0907 5.5705 2.7420 12 1 -0.9051 4.2426 3.1082 13 6 3.5636 1.4447 -0.1393 14 1 4.0214 0.8899 0.6797 15 6 3.9838 0.8470 -1.5041 16 6 5.1429 1.7853 -1.9264 17 8 4.7109 3.0832 -1.4647 18 6 4.0995 2.8889 -0.1783 19 1 -0.3634 0.4197 0.9381 20 1 -0.3634 0.6025 -0.8324 21 1 -0.3634 -1.0222 -0.1055 22 1 1.8932 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 -0.1518 4.5025 0.1248 25 1 4.3358 -0.1781 -1.3879 26 1 3.1631 0.8963 -2.2196 27 1 6.0715 1.4930 -1.4360 28 1 5.2628 1.7836 -3.0098 29 1 3.2775 3.5929 -0.0485 30 1 4.8397 3.0311 0.6090 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260595222.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:18 Heat of formation + Delta-G solvation = -71.561547 kcal Electronic energy + Delta-G solvation = -11830.123238 eV Core-core repulsion = 9817.489657 eV Total energy + Delta-G solvation = -2012.633580 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.66677 -35.01193 -31.86047 -30.61891 -28.70916 -25.89182 -23.78961 -21.59376 -20.44397 -18.89207 -16.54203 -15.41761 -15.21943 -14.46060 -14.08730 -13.42139 -12.71976 -12.50083 -12.03687 -11.71256 -11.23596 -10.99603 -10.91899 -10.74663 -10.42541 -10.34996 -10.02552 -9.91164 -9.53070 -8.85812 -8.80222 -8.71281 -8.42178 -6.00200 -4.01596 3.29281 3.38716 3.41834 4.44028 4.75474 5.26531 5.50816 5.61500 5.71059 5.91701 6.20242 6.28896 6.32444 6.35088 6.50563 6.55942 6.61162 6.81137 6.90439 7.11361 7.17669 7.31758 7.42905 7.63662 7.72464 7.86526 7.99163 8.47776 9.10344 9.60366 11.07960 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.036759 B = 0.016243 C = 0.012649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.533062 B = 1723.400288 C = 2213.069938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.107 4.107 3 C 0.035 3.965 4 H 0.072 0.928 5 C -0.507 4.507 6 H 0.051 0.949 7 C 0.068 3.932 8 N -0.888 5.888 9 Si 0.880 3.120 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.285 1.285 13 C -0.105 4.105 14 H 0.058 0.942 15 C -0.152 4.152 16 C 0.045 3.955 17 O -0.390 6.390 18 C 0.059 3.941 19 H 0.058 0.942 20 H 0.047 0.953 21 H 0.020 0.980 22 H 0.026 0.974 23 H 0.037 0.963 24 H 0.260 0.740 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.694 -4.341 -1.593 6.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.145 4.145 3 C 0.017 3.983 4 H 0.090 0.910 5 C -0.546 4.546 6 H 0.069 0.931 7 C -0.134 4.134 8 N -0.526 5.526 9 Si 0.708 3.292 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.211 1.211 13 C -0.125 4.125 14 H 0.076 0.924 15 C -0.190 4.190 16 C -0.032 4.032 17 O -0.309 6.309 18 C -0.017 4.017 19 H 0.077 0.923 20 H 0.066 0.934 21 H 0.039 0.961 22 H 0.045 0.955 23 H 0.055 0.945 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.123 0.877 30 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.597 -3.983 -1.767 6.334 hybrid contribution -0.212 0.325 1.084 1.152 sum 4.384 -3.658 -0.683 5.751 Atomic orbital electron populations 1.21513 0.96798 0.97624 1.02568 1.21585 0.95580 0.99524 0.97838 1.19106 0.87942 0.91881 0.99412 0.90978 1.21059 1.32078 1.09087 0.92345 0.93075 1.24938 0.95321 0.97413 0.95693 1.69919 1.34286 1.23343 1.25056 0.86723 0.77938 0.80138 0.84355 1.19794 1.20935 1.21145 1.22679 1.01409 0.94096 0.94283 0.92354 1.23250 0.98131 0.98371 0.99253 1.23441 0.96393 0.84439 0.98893 1.88803 1.78270 1.27787 1.36067 1.23264 0.96360 0.99096 0.82945 0.92312 0.93402 0.96079 0.95484 0.94455 0.92972 0.91816 0.90832 0.93518 0.90388 0.87654 0.94517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.63 37.16 0.36 -2.35 16 2 C -0.11 -2.29 5.29 -26.73 -0.14 -2.44 16 3 C 0.04 0.84 1.42 -91.77 -0.13 0.71 16 4 H 0.07 1.96 6.91 -51.93 -0.36 1.60 16 5 C -0.51 -13.28 6.48 -34.44 -0.22 -13.50 16 6 H 0.05 1.36 7.82 -52.49 -0.41 0.95 16 7 C 0.07 1.83 5.07 -17.82 -0.09 1.74 16 8 N -0.89 -24.98 12.62 55.43 0.70 -24.28 16 9 Si 0.88 20.94 29.54 -169.99 -5.02 15.92 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 C -0.11 -2.23 2.60 -89.10 -0.23 -2.47 16 14 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 15 C -0.15 -2.75 5.65 -24.73 -0.14 -2.89 16 16 C 0.05 0.78 7.72 38.21 0.29 1.07 16 17 O -0.39 -8.36 11.52 -35.23 -0.41 -8.77 16 18 C 0.06 1.31 6.99 37.73 0.26 1.58 16 19 H 0.06 1.34 7.59 -51.93 -0.39 0.94 16 20 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 21 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.03 0.52 7.16 -51.93 -0.37 0.15 16 23 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.07 1.38 7.78 -51.93 -0.40 0.98 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.11 2.67 6.82 -51.93 -0.35 2.32 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 243.39 15.07 3.67 3.67 Total: -1.00 -27.55 243.39 -5.91 -33.46 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -4.81 Total: -1.46 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: -0.04 Total: -18.54 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.70 Total: -24.28 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.41 Total: -8.77 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -27.55 -5.91 -33.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260595222.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.099 kcal (2) G-P(sol) polarization free energy of solvation -27.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds