Wall clock time and date at job start Mon Mar 30 2020 01:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47197 * 2 1 4 4 H 1.09002 * 109.46912 * 305.53994 * 3 2 1 5 5 C 1.50702 * 109.46997 * 65.53979 * 3 2 1 6 6 H 1.07998 * 120.00094 * 58.07042 * 5 3 2 7 7 C 1.37882 * 119.99637 * 238.07180 * 5 3 2 8 8 N 1.31507 * 120.00395 * 6.48443 * 7 5 3 9 9 Si 1.86800 * 119.99506 * 186.48155 * 7 5 3 10 10 H 1.48501 * 109.47392 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47341 * 120.00123 * 9 7 5 12 12 H 1.48511 * 109.46985 * 240.00025 * 9 7 5 13 13 C 1.53001 * 109.47066 * 185.54094 * 3 2 1 14 14 H 1.08998 * 110.43288 * 301.08991 * 13 3 2 15 15 C 1.54805 * 110.48736 * 63.77947 * 13 3 2 16 16 C 1.54995 * 102.09152 * 139.55749 * 15 13 3 17 17 O 1.44380 * 103.49049 * 322.97669 * 16 15 13 18 18 C 1.43746 * 106.97589 * 40.05775 * 17 16 15 19 19 H 1.09007 * 109.47354 * 294.10260 * 1 2 3 20 20 H 1.08996 * 109.47752 * 54.10034 * 1 2 3 21 21 H 1.09004 * 109.47498 * 174.10674 * 1 2 3 22 22 H 1.09001 * 109.46782 * 240.00255 * 2 1 3 23 23 H 1.08997 * 109.47361 * 120.00196 * 2 1 3 24 24 H 0.97001 * 120.00067 * 180.02562 * 8 7 5 25 25 H 1.09001 * 110.90478 * 257.74915 * 15 13 3 26 26 H 1.08999 * 110.91011 * 21.35958 * 15 13 3 27 27 H 1.09004 * 110.61893 * 81.47605 * 16 15 13 28 28 H 1.09000 * 110.62115 * 204.47574 * 16 15 13 29 29 H 1.09000 * 109.87703 * 214.06457 * 18 17 16 30 30 H 1.09003 * 109.87402 * 92.91298 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5979 1.9841 -0.8362 5 6 1.6527 2.1122 1.2933 6 1 1.9754 1.6943 2.2355 7 6 0.8865 3.2583 1.2737 8 7 0.3869 3.6960 0.1386 9 14 0.5581 4.1894 2.8594 10 1 1.2268 3.4948 3.9889 11 1 1.0907 5.5705 2.7420 12 1 -0.9051 4.2426 3.1082 13 6 3.5636 1.4447 -0.1393 14 1 4.0214 0.8899 0.6797 15 6 3.9838 0.8470 -1.5041 16 6 5.1429 1.7853 -1.9264 17 8 4.7109 3.0832 -1.4647 18 6 4.0995 2.8889 -0.1783 19 1 -0.3634 0.4197 0.9381 20 1 -0.3634 0.6025 -0.8324 21 1 -0.3634 -1.0222 -0.1055 22 1 1.8932 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 -0.1518 4.5025 0.1248 25 1 4.3358 -0.1781 -1.3879 26 1 3.1631 0.8963 -2.2196 27 1 6.0715 1.4930 -1.4360 28 1 5.2628 1.7836 -3.0098 29 1 3.2775 3.5929 -0.0485 30 1 4.8397 3.0311 0.6090 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260595222.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:17 Heat of formation + Delta-G solvation = -87.990465 kcal Electronic energy + Delta-G solvation = -11830.835649 eV Core-core repulsion = 9817.489657 eV Total energy + Delta-G solvation = -2013.345992 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.28083 -36.81362 -33.83231 -32.25744 -30.30560 -27.78242 -25.65303 -23.09452 -22.15771 -20.66100 -18.54102 -16.99095 -16.82729 -16.39381 -15.71823 -15.20843 -14.36954 -14.30805 -13.72933 -13.41531 -13.05449 -12.84742 -12.72156 -12.30026 -12.23194 -12.02438 -11.79180 -11.58270 -11.18951 -10.77722 -10.65679 -10.47933 -10.34116 -8.05892 -6.11152 1.38377 1.42900 1.51500 2.45543 3.22949 3.24948 3.96695 4.13344 4.22868 4.46717 4.58251 4.60942 4.70789 4.85102 4.94432 4.97260 5.04928 5.17607 5.26958 5.31488 5.42962 5.54252 5.65993 5.75164 5.91714 5.98475 6.16642 6.48800 7.07078 7.52754 9.02167 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.036759 B = 0.016243 C = 0.012649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.533062 B = 1723.400288 C = 2213.069938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 C 0.034 3.966 4 H 0.033 0.967 5 C -0.509 4.509 6 H 0.046 0.954 7 C 0.023 3.977 8 N -0.921 5.921 9 Si 0.933 3.067 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.285 1.285 13 C -0.106 4.106 14 H 0.069 0.931 15 C -0.145 4.145 16 C 0.042 3.958 17 O -0.413 6.413 18 C 0.063 3.937 19 H 0.034 0.966 20 H 0.027 0.973 21 H 0.055 0.945 22 H 0.050 0.950 23 H 0.045 0.955 24 H 0.258 0.742 25 H 0.096 0.904 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.882 -5.805 -1.456 8.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.015 3.985 4 H 0.051 0.949 5 C -0.547 4.547 6 H 0.064 0.936 7 C -0.175 4.175 8 N -0.560 5.560 9 Si 0.760 3.240 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.125 4.125 14 H 0.087 0.913 15 C -0.182 4.182 16 C -0.034 4.034 17 O -0.333 6.333 18 C -0.013 4.013 19 H 0.053 0.947 20 H 0.046 0.954 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.115 0.885 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.121 0.879 29 H 0.081 0.919 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.794 -5.461 -1.623 8.126 hybrid contribution -0.552 0.743 1.007 1.368 sum 5.242 -4.718 -0.616 7.080 Atomic orbital electron populations 1.21442 0.96965 0.99134 1.00404 1.21521 0.95443 0.97922 0.99291 1.19026 0.89889 0.92833 0.96740 0.94891 1.21316 1.31221 1.09052 0.93100 0.93566 1.25534 0.95601 0.98400 0.97990 1.70044 1.35449 1.23755 1.26788 0.85888 0.77635 0.78918 0.81560 1.19013 1.21060 1.21128 1.22587 0.99236 0.93978 0.96739 0.91290 1.23198 0.98134 1.00197 0.96699 1.23734 0.96820 0.82171 1.00682 1.88769 1.78399 1.30493 1.35686 1.23070 0.95567 0.98754 0.83949 0.94658 0.95381 0.92636 0.93095 0.93647 0.93327 0.88531 0.92051 0.90958 0.87926 0.91874 0.93242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.63 71.98 0.69 -4.38 16 2 C -0.10 -4.26 5.29 30.59 0.16 -4.10 16 3 C 0.03 1.61 1.42 -11.54 -0.02 1.60 16 4 H 0.03 1.83 6.91 -2.39 -0.02 1.81 16 5 C -0.51 -26.76 6.48 25.60 0.17 -26.59 16 6 H 0.05 2.43 7.82 -2.91 -0.02 2.41 16 7 C 0.02 1.27 5.07 84.66 0.43 1.70 16 8 N -0.92 -53.39 12.62 21.45 0.27 -53.12 16 9 Si 0.93 43.49 29.54 68.60 2.03 45.52 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 13 C -0.11 -4.34 2.60 -9.81 -0.03 -4.37 16 14 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 15 C -0.14 -4.80 5.65 31.89 0.18 -4.62 16 16 C 0.04 1.31 7.72 72.66 0.56 1.87 16 17 O -0.41 -17.29 11.52 -148.98 -1.72 -19.01 16 18 C 0.06 2.77 6.99 72.35 0.51 3.27 16 19 H 0.03 1.59 7.59 -2.38 -0.02 1.57 16 20 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 21 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 22 H 0.05 1.84 7.16 -2.39 -0.02 1.82 16 23 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 25 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.06 2.18 7.78 -2.39 -0.02 2.16 16 27 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 28 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.06 3.30 6.82 -2.39 -0.02 3.29 16 30 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -59.49 243.39 4.32 -55.17 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 1.09 Total: 7.06 kcal Atomic # 6 Polarization: -38.27 SS G_CDS: 2.66 Total: -35.62 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 0.27 Total: -53.12 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -1.72 Total: -19.01 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -59.49 4.32 -55.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260595222.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.820 kcal (2) G-P(sol) polarization free energy of solvation -59.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds