Wall clock time and date at job start Mon Mar 30 2020 01:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.50705 * 109.47390 * 64.99953 * 4 2 1 6 6 H 1.08000 * 119.99498 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00441 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99840 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47080 * 89.99765 * 9 7 5 11 11 H 1.48497 * 109.46846 * 209.99784 * 9 7 5 12 12 H 1.48499 * 109.47093 * 329.99702 * 9 7 5 13 13 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 14 14 H 1.08996 * 110.33047 * 60.69459 * 13 2 1 15 15 C 1.54478 * 110.36820 * 298.44925 * 13 2 1 16 16 C 1.54508 * 104.06168 * 217.18756 * 15 13 2 17 17 C 1.54484 * 104.06228 * 0.02562 * 16 15 13 18 18 O 1.44424 * 110.37431 * 182.95055 * 13 2 1 19 19 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 20 20 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 21 21 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47630 * 185.00216 * 4 2 1 23 23 H 1.09004 * 109.47346 * 305.00346 * 4 2 1 24 24 H 0.97002 * 119.99729 * 180.02562 * 8 7 5 25 25 H 1.09000 * 110.51489 * 335.83490 * 15 13 2 26 26 H 1.09000 * 110.51314 * 98.54748 * 15 13 2 27 27 H 1.09007 * 110.51416 * 118.64502 * 16 15 13 28 28 H 1.08999 * 110.51629 * 241.22010 * 16 15 13 29 29 H 1.08997 * 110.37043 * 142.81258 * 17 16 15 30 30 H 1.08997 * 110.36797 * 265.03705 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9923 -0.4023 -3.7283 8 7 2.6754 -1.5194 -3.8512 9 14 1.4987 0.5628 -5.2497 10 1 2.5648 1.5416 -5.5825 11 1 1.3109 -0.3711 -6.3889 12 1 0.2280 1.2850 -4.9870 13 6 2.0400 -0.7213 1.2492 14 1 1.6946 -1.7550 1.2572 15 6 1.5688 0.0129 2.5241 16 6 2.7651 -0.1133 3.4938 17 6 3.8178 -0.9083 2.6898 18 8 3.4824 -0.6726 1.3043 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 3.1263 -0.7996 -1.2056 23 1 1.6053 -1.7198 -1.2952 24 1 2.9227 -1.8423 -4.7318 25 1 1.3621 1.0609 2.3070 26 1 0.6866 -0.4730 2.9407 27 1 3.1498 0.8723 3.7561 28 1 2.4736 -0.6595 4.3909 29 1 4.8198 -0.5383 2.9069 30 1 3.7482 -1.9712 2.9208 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260645054.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:28 Heat of formation + Delta-G solvation = -71.712969 kcal Electronic energy + Delta-G solvation = -11474.878915 eV Core-core repulsion = 9462.238769 eV Total energy + Delta-G solvation = -2012.640146 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.06573 -34.73586 -32.21465 -31.56082 -28.01194 -26.55520 -23.88822 -22.15092 -20.70257 -19.17136 -16.42595 -15.75941 -15.14722 -15.06494 -14.39616 -13.39944 -12.98111 -12.66722 -12.23175 -11.58187 -11.48543 -11.36893 -11.02848 -10.83766 -10.83392 -10.60470 -10.26383 -10.19783 -9.70328 -9.27155 -9.00167 -8.82138 -8.24208 -5.89251 -3.90508 3.37548 3.43388 3.46293 4.37346 4.53352 4.92360 5.03305 5.24421 5.45576 5.48096 5.60341 5.85735 5.91766 5.96404 6.04947 6.15608 6.21273 6.30265 6.37005 6.57178 6.99130 7.03098 7.23498 7.45061 7.82006 8.00653 8.13988 8.54189 9.16394 9.71893 11.22168 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.069630 B = 0.009702 C = 0.008976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.030434 B = 2885.417352 C = 3118.770641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.081 4.081 3 H 0.063 0.937 4 C 0.029 3.971 5 C -0.514 4.514 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.081 3.919 14 H 0.061 0.939 15 C -0.150 4.150 16 C -0.156 4.156 17 C 0.041 3.959 18 O -0.360 6.360 19 H 0.033 0.967 20 H 0.066 0.934 21 H 0.045 0.955 22 H 0.025 0.975 23 H 0.013 0.987 24 H 0.259 0.741 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.744 1.880 12.220 12.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.099 4.099 3 H 0.081 0.919 4 C -0.008 4.008 5 C -0.552 4.552 6 H 0.073 0.927 7 C -0.146 4.146 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.023 3.977 14 H 0.079 0.921 15 C -0.188 4.188 16 C -0.193 4.193 17 C -0.037 4.037 18 O -0.279 6.279 19 H 0.052 0.948 20 H 0.085 0.915 21 H 0.065 0.935 22 H 0.043 0.957 23 H 0.031 0.969 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.527 1.799 11.905 12.136 hybrid contribution -0.323 0.382 -0.672 0.838 sum -1.850 2.181 11.233 11.591 Atomic orbital electron populations 1.21702 0.95610 1.01013 1.00559 1.21265 0.94732 0.99586 0.94353 0.91891 1.19099 0.96949 0.94961 0.89801 1.21267 1.34582 1.08184 0.91160 0.92715 1.25019 0.95428 0.95103 0.99019 1.69982 1.39086 1.21211 1.23222 0.86648 0.78845 0.79830 0.82981 1.20774 1.21340 1.19974 1.23194 0.80601 0.98502 0.95394 0.92137 1.23033 0.97787 1.02073 0.95891 1.22942 0.96603 1.01052 0.98747 1.23335 0.98664 0.98542 0.83122 1.89281 1.21666 1.92852 1.24066 0.94800 0.91470 0.93539 0.95704 0.96879 0.93174 0.90737 0.91172 0.91172 0.91242 0.89789 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.79 37.16 0.33 -2.17 16 2 C -0.08 -1.74 2.01 -90.62 -0.18 -1.92 16 3 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 4 C 0.03 0.78 4.39 -27.88 -0.12 0.66 16 5 C -0.51 -14.88 8.41 -34.44 -0.29 -15.17 16 6 H 0.05 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -27.81 13.29 55.43 0.74 -27.07 16 9 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.08 1.51 2.80 -25.95 -0.07 1.43 16 14 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 15 C -0.15 -2.18 5.57 -25.16 -0.14 -2.32 16 16 C -0.16 -1.96 7.09 -25.16 -0.18 -2.14 16 17 C 0.04 0.60 7.63 37.94 0.29 0.89 16 18 O -0.36 -7.25 10.77 -35.23 -0.38 -7.63 16 19 H 0.03 0.53 7.21 -51.93 -0.37 0.15 16 20 H 0.07 1.36 6.95 -51.93 -0.36 1.00 16 21 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 22 H 0.02 0.74 7.67 -51.93 -0.40 0.34 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.07 1.08 7.73 -51.93 -0.40 0.68 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 245.29 15.07 3.70 3.70 Total: -1.00 -31.57 245.29 -6.28 -37.85 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: -4.85 Total: -4.80 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -0.47 Total: -19.21 kcal Atomic # 7 Polarization: -27.81 SS G_CDS: 0.74 Total: -27.07 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.38 Total: -7.63 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.57 -6.28 -37.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260645054.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.863 kcal (2) G-P(sol) polarization free energy of solvation -31.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds