Wall clock time and date at job start Mon Mar 30 2020 01:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.50705 * 109.47390 * 64.99953 * 4 2 1 6 6 H 1.08000 * 119.99498 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00441 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99840 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47080 * 89.99765 * 9 7 5 11 11 H 1.48497 * 109.46846 * 209.99784 * 9 7 5 12 12 H 1.48499 * 109.47093 * 329.99702 * 9 7 5 13 13 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 14 14 H 1.08996 * 110.33047 * 60.69459 * 13 2 1 15 15 C 1.54478 * 110.36820 * 298.44925 * 13 2 1 16 16 C 1.54508 * 104.06168 * 217.18756 * 15 13 2 17 17 C 1.54484 * 104.06228 * 0.02562 * 16 15 13 18 18 O 1.44424 * 110.37431 * 182.95055 * 13 2 1 19 19 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 20 20 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 21 21 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47630 * 185.00216 * 4 2 1 23 23 H 1.09004 * 109.47346 * 305.00346 * 4 2 1 24 24 H 0.97002 * 119.99729 * 180.02562 * 8 7 5 25 25 H 1.09000 * 110.51489 * 335.83490 * 15 13 2 26 26 H 1.09000 * 110.51314 * 98.54748 * 15 13 2 27 27 H 1.09007 * 110.51416 * 118.64502 * 16 15 13 28 28 H 1.08999 * 110.51629 * 241.22010 * 16 15 13 29 29 H 1.08997 * 110.37043 * 142.81258 * 17 16 15 30 30 H 1.08997 * 110.36797 * 265.03705 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9923 -0.4023 -3.7283 8 7 2.6754 -1.5194 -3.8512 9 14 1.4987 0.5628 -5.2497 10 1 2.5648 1.5416 -5.5825 11 1 1.3109 -0.3711 -6.3889 12 1 0.2280 1.2850 -4.9870 13 6 2.0400 -0.7213 1.2492 14 1 1.6946 -1.7550 1.2572 15 6 1.5688 0.0129 2.5241 16 6 2.7651 -0.1133 3.4938 17 6 3.8178 -0.9083 2.6898 18 8 3.4824 -0.6726 1.3043 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 3.1263 -0.7996 -1.2056 23 1 1.6053 -1.7198 -1.2952 24 1 2.9227 -1.8423 -4.7318 25 1 1.3621 1.0609 2.3070 26 1 0.6866 -0.4730 2.9407 27 1 3.1498 0.8723 3.7561 28 1 2.4736 -0.6595 4.3909 29 1 4.8198 -0.5383 2.9069 30 1 3.7482 -1.9712 2.9208 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260645054.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:28 Heat of formation + Delta-G solvation = -92.223402 kcal Electronic energy + Delta-G solvation = -11475.768315 eV Core-core repulsion = 9462.238769 eV Total energy + Delta-G solvation = -2013.529546 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.42487 -36.56338 -34.27365 -32.84736 -29.69819 -28.24514 -25.75662 -23.64749 -22.02023 -20.83300 -18.54835 -17.15423 -16.64702 -16.44984 -16.35304 -14.74991 -14.50764 -14.36040 -14.15289 -13.41441 -12.89262 -12.82595 -12.76992 -12.52615 -12.33117 -12.10987 -12.04596 -11.59868 -11.42668 -11.13591 -10.77312 -10.59080 -10.52313 -8.16419 -6.27000 1.39024 1.41399 1.52134 2.42108 3.11254 3.16135 3.78236 3.85827 4.10010 4.20217 4.39509 4.49084 4.60319 4.64874 4.85878 4.87960 4.92703 4.98270 5.15284 5.21069 5.26613 5.40262 5.45142 5.57620 5.78738 5.88756 6.13920 6.28602 6.89905 7.41064 8.95907 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.069630 B = 0.009702 C = 0.008976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.030434 B = 2885.417352 C = 3118.770641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.076 4.076 3 H 0.053 0.947 4 C 0.036 3.964 5 C -0.531 4.531 6 H 0.063 0.937 7 C -0.007 4.007 8 N -0.937 5.937 9 Si 0.966 3.034 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.259 1.259 13 C 0.076 3.924 14 H 0.054 0.946 15 C -0.143 4.143 16 C -0.145 4.145 17 C 0.029 3.971 18 O -0.406 6.406 19 H 0.074 0.926 20 H 0.049 0.951 21 H 0.046 0.954 22 H -0.018 1.018 23 H -0.015 1.015 24 H 0.262 0.738 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.903 3.088 13.428 14.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.095 4.095 3 H 0.071 0.929 4 C -0.001 4.001 5 C -0.569 4.569 6 H 0.081 0.919 7 C -0.203 4.203 8 N -0.578 5.578 9 Si 0.790 3.210 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.183 1.183 13 C 0.019 3.981 14 H 0.072 0.928 15 C -0.180 4.180 16 C -0.183 4.183 17 C -0.048 4.048 18 O -0.326 6.326 19 H 0.093 0.907 20 H 0.069 0.931 21 H 0.065 0.935 22 H 0.000 1.000 23 H 0.003 0.997 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.100 0.900 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.693 3.016 13.136 13.744 hybrid contribution 0.109 -0.044 -1.022 1.029 sum -2.585 2.972 12.113 12.738 Atomic orbital electron populations 1.21611 0.93291 1.01421 1.01733 1.21137 0.96673 0.98409 0.93276 0.92850 1.18944 0.94123 0.94241 0.92770 1.21684 1.34562 1.08582 0.92118 0.91865 1.26042 0.95242 0.96158 1.02897 1.70138 1.40304 1.23101 1.24239 0.85441 0.79066 0.78286 0.78220 1.20045 1.20765 1.18339 1.23156 0.80492 0.98373 0.96099 0.92823 1.22992 0.99454 1.01699 0.93876 1.22930 0.94755 1.01768 0.98848 1.23654 1.00323 0.99806 0.80979 1.89237 1.22498 1.93200 1.27706 0.90681 0.93146 0.93505 0.99993 0.99660 0.92979 0.90504 0.88646 0.90011 0.88197 0.88415 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.53 8.79 71.98 0.63 -3.89 16 2 C -0.08 -3.33 2.01 -10.79 -0.02 -3.35 16 3 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 4 C 0.04 2.06 4.39 29.85 0.13 2.19 16 5 C -0.53 -31.49 8.41 25.60 0.22 -31.27 16 6 H 0.06 3.55 7.06 -2.91 -0.02 3.53 16 7 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 8 N -0.94 -59.92 13.29 21.44 0.28 -59.64 16 9 Si 0.97 45.83 29.54 68.60 2.03 47.85 16 10 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 13 C 0.08 2.82 2.80 31.10 0.09 2.91 16 14 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 15 C -0.14 -3.71 5.57 31.61 0.18 -3.53 16 16 C -0.15 -3.16 7.09 31.61 0.22 -2.94 16 17 C 0.03 0.80 7.63 72.49 0.55 1.35 16 18 O -0.41 -16.63 10.77 -148.98 -1.61 -18.23 16 19 H 0.07 2.13 7.21 -2.39 -0.02 2.11 16 20 H 0.05 1.99 6.95 -2.39 -0.02 1.98 16 21 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 22 H -0.02 -1.18 7.67 -2.39 -0.02 -1.20 16 23 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 24 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 25 H 0.08 1.97 7.73 -2.39 -0.02 1.95 16 26 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -70.51 245.29 4.25 -66.26 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: 1.08 Total: 2.22 kcal Atomic # 6 Polarization: -40.92 SS G_CDS: 2.46 Total: -38.46 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: 0.28 Total: -59.64 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -1.61 Total: -18.23 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -70.51 4.25 -66.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260645054.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.965 kcal (2) G-P(sol) polarization free energy of solvation -70.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds