Wall clock time and date at job start Mon Mar 30 2020 01:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46917 * 2 1 4 4 C 1.53001 * 109.47042 * 119.99940 * 2 1 3 5 5 C 1.50694 * 109.47168 * 295.00098 * 4 2 1 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99902 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99854 * 179.72538 * 7 5 4 10 10 H 1.48504 * 109.47032 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46816 * 120.00323 * 9 7 5 12 12 H 1.48495 * 109.46630 * 240.00111 * 9 7 5 13 13 C 1.53001 * 109.47100 * 240.00151 * 2 1 3 14 14 H 1.09000 * 110.32751 * 187.25249 * 13 2 1 15 15 C 1.54480 * 110.37102 * 65.00424 * 13 2 1 16 16 C 1.54518 * 104.05864 * 217.18940 * 15 13 2 17 17 C 1.54474 * 104.06225 * 359.97438 * 16 15 13 18 18 O 1.44421 * 110.37114 * 309.61812 * 13 2 1 19 19 H 1.08995 * 109.47017 * 300.00198 * 1 2 3 20 20 H 1.09005 * 109.47003 * 60.00012 * 1 2 3 21 21 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46837 * 175.00120 * 4 2 1 23 23 H 1.09002 * 109.46926 * 54.99923 * 4 2 1 24 24 H 0.97001 * 119.99646 * 180.02562 * 8 7 5 25 25 H 1.09000 * 110.51363 * 335.82741 * 15 13 2 26 26 H 1.08995 * 110.51326 * 98.40719 * 15 13 2 27 27 H 1.08998 * 110.51249 * 118.64486 * 16 15 13 28 28 H 1.09002 * 110.50801 * 241.21678 * 16 15 13 29 29 H 1.08998 * 110.37583 * 142.81311 * 17 16 15 30 30 H 1.09010 * 110.37096 * 265.14731 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0570 2.4765 6 1 1.0806 0.9746 2.3757 7 6 1.9923 -0.4023 3.7284 8 7 2.6755 -1.5194 3.8512 9 14 1.5047 0.5664 5.2493 10 1 0.7524 1.7806 4.8428 11 1 0.6480 -0.2778 6.1202 12 1 2.7257 0.9662 5.9939 13 6 2.0400 -0.7212 -1.2493 14 1 3.1222 -0.8425 -1.2012 15 6 1.6423 0.0600 -2.5212 16 6 1.3102 -1.0432 -3.5509 17 6 1.5472 -2.3603 -2.7793 18 8 1.3936 -2.0053 -1.3875 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 3.1263 -0.7994 1.2056 23 1 1.6053 -1.7198 1.2952 24 1 2.9221 -1.8427 4.7319 25 1 0.7666 0.6803 -2.3303 26 1 2.4743 0.6722 -2.8692 27 1 0.2704 -0.9683 -3.8690 28 1 1.9773 -0.9767 -4.4104 29 1 0.8050 -3.1059 -3.0644 30 1 2.5537 -2.7344 -2.9673 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260645060.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:34 Heat of formation + Delta-G solvation = -89.975872 kcal Electronic energy + Delta-G solvation = -11527.308053 eV Core-core repulsion = 9513.875968 eV Total energy + Delta-G solvation = -2013.432085 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.47668 -36.45070 -34.18873 -32.83285 -29.68646 -28.28805 -25.90927 -23.71068 -21.98518 -20.60627 -18.50581 -17.22954 -16.59311 -16.51431 -16.13309 -14.96243 -14.56310 -14.38589 -14.16840 -13.39549 -12.89428 -12.84056 -12.60509 -12.45799 -12.30766 -12.17750 -11.99959 -11.58527 -11.38888 -11.04565 -10.78164 -10.55410 -10.54069 -8.16658 -6.27170 1.39555 1.40452 1.53695 2.42202 3.14383 3.16235 3.79254 3.88928 4.10725 4.25430 4.35828 4.48877 4.53138 4.68953 4.88170 4.90479 4.96756 5.01857 5.17425 5.23569 5.29333 5.43700 5.50635 5.54429 5.80654 5.89415 6.13215 6.28367 6.89992 7.41127 8.95817 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.081530 B = 0.009453 C = 0.008960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.348622 B = 2961.428914 C = 3124.328392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.078 4.078 3 H 0.074 0.926 4 C 0.037 3.963 5 C -0.531 4.531 6 H 0.065 0.935 7 C -0.007 4.007 8 N -0.937 5.937 9 Si 0.966 3.034 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.076 3.924 14 H 0.049 0.951 15 C -0.148 4.148 16 C -0.144 4.144 17 C 0.030 3.970 18 O -0.398 6.398 19 H 0.044 0.956 20 H 0.067 0.933 21 H 0.036 0.964 22 H -0.019 1.019 23 H -0.016 1.016 24 H 0.261 0.739 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.865 3.131 -13.387 14.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.096 4.096 3 H 0.092 0.908 4 C 0.000 4.000 5 C -0.569 4.569 6 H 0.083 0.917 7 C -0.204 4.204 8 N -0.578 5.578 9 Si 0.790 3.210 10 H -0.183 1.183 11 H -0.206 1.206 12 H -0.204 1.204 13 C 0.019 3.981 14 H 0.067 0.933 15 C -0.185 4.185 16 C -0.181 4.181 17 C -0.047 4.047 18 O -0.317 6.317 19 H 0.063 0.937 20 H 0.086 0.914 21 H 0.055 0.945 22 H 0.000 1.000 23 H 0.002 0.998 24 H 0.070 0.930 25 H 0.100 0.900 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.900 2.906 -13.107 13.735 hybrid contribution 0.244 0.009 1.015 1.044 sum -2.656 2.915 -12.092 12.718 Atomic orbital electron populations 1.21524 0.94622 1.00692 1.00656 1.21165 0.96990 0.98313 0.93145 0.90782 1.18959 0.93653 0.94584 0.92849 1.21725 1.34465 1.08577 0.92085 0.91733 1.26049 0.95254 0.96154 1.02913 1.70145 1.40372 1.23118 1.24181 0.85388 0.78083 0.78851 0.78661 1.18267 1.20615 1.20386 1.23120 0.95411 0.83559 0.96039 0.93271 1.23043 1.03058 0.98715 0.93690 1.22899 1.03522 0.93238 0.98451 1.23636 1.01654 0.98333 0.81066 1.89208 1.78014 1.36941 1.27578 0.93738 0.91447 0.94478 1.00038 0.99784 0.92985 0.89979 0.89227 0.89841 0.88536 0.88266 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.69 8.58 71.98 0.62 -4.07 16 2 C -0.08 -3.35 2.20 -10.79 -0.02 -3.37 16 3 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 4 C 0.04 2.06 4.36 29.85 0.13 2.19 16 5 C -0.53 -31.17 8.41 25.60 0.22 -30.96 16 6 H 0.06 3.60 7.06 -2.91 -0.02 3.58 16 7 C -0.01 -0.41 5.46 84.66 0.46 0.06 16 8 N -0.94 -59.65 13.29 21.45 0.28 -59.37 16 9 Si 0.97 45.62 29.54 68.60 2.03 47.64 16 10 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 C 0.08 2.80 2.95 31.10 0.09 2.89 16 14 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 15 C -0.15 -3.83 6.47 31.61 0.20 -3.62 16 16 C -0.14 -3.05 7.09 31.61 0.22 -2.83 16 17 C 0.03 0.80 7.63 72.48 0.55 1.35 16 18 O -0.40 -15.54 10.22 -148.98 -1.52 -17.06 16 19 H 0.04 1.86 6.95 -2.39 -0.02 1.84 16 20 H 0.07 2.15 6.39 -2.38 -0.02 2.13 16 21 H 0.04 1.57 7.50 -2.39 -0.02 1.55 16 22 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 23 H -0.02 -1.03 8.12 -2.39 -0.02 -1.05 16 24 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 25 H 0.08 2.06 6.11 -2.39 -0.01 2.05 16 26 H 0.09 1.96 8.14 -2.39 -0.02 1.95 16 27 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -69.28 243.08 4.35 -64.92 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: 1.09 Total: 2.24 kcal Atomic # 6 Polarization: -40.85 SS G_CDS: 2.47 Total: -38.37 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: 0.28 Total: -59.37 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -1.52 Total: -17.06 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -69.28 4.35 -64.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260645060.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.054 kcal (2) G-P(sol) polarization free energy of solvation -69.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds