Wall clock time and date at job start Mon Mar 30 2020 02:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 108.43266 * 2 1 4 4 C 1.46814 * 108.50193 * 117.65194 * 2 1 3 5 5 N 1.50187 * 106.89494 * 179.28691 * 4 2 1 6 6 C 1.36935 * 120.55970 * 111.73395 * 5 4 2 7 7 H 1.07999 * 119.99969 * 155.46836 * 6 5 4 8 8 C 1.38814 * 120.00300 * 335.46421 * 6 5 4 9 9 N 1.31615 * 120.00027 * 340.57014 * 8 6 5 10 10 Si 1.86801 * 120.00142 * 160.56700 * 8 6 5 11 11 H 1.48496 * 109.47077 * 0.02562 * 10 8 6 12 12 H 1.48509 * 109.47087 * 120.00036 * 10 8 6 13 13 H 1.48493 * 109.47413 * 239.99952 * 10 8 6 14 14 C 1.43612 * 118.87699 * 291.75502 * 5 4 2 15 15 C 1.54931 * 116.19867 * 89.55459 * 14 5 4 16 16 C 1.54882 * 109.69701 * 318.79193 * 15 14 5 17 17 N 1.44247 * 110.15895 * 321.60867 * 16 15 14 18 18 H 1.09002 * 109.47480 * 300.00434 * 1 2 3 19 19 H 1.08999 * 109.47060 * 60.00764 * 1 2 3 20 20 H 1.09003 * 109.46862 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.96831 * 298.64182 * 4 2 1 22 22 H 1.09006 * 109.96602 * 59.85043 * 4 2 1 23 23 H 0.96996 * 120.00414 * 180.02562 * 9 8 6 24 24 H 1.08998 * 108.13766 * 211.30861 * 14 5 4 25 25 H 1.09009 * 108.13524 * 328.02020 * 14 5 4 26 26 H 1.08998 * 109.43514 * 78.86226 * 15 14 5 27 27 H 1.08998 * 109.43551 * 198.76939 * 15 14 5 28 28 H 1.09010 * 109.33953 * 81.85213 * 16 15 14 29 29 H 1.09000 * 109.34061 * 201.52330 * 16 15 14 30 30 H 1.00898 * 111.13547 * 339.46564 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8746 1.0341 0.0000 4 6 1.9958 -0.6461 1.2332 5 7 3.4970 -0.6425 1.1877 6 6 4.2181 0.1302 2.0583 7 1 5.2340 -0.1399 2.3060 8 6 3.6434 1.2609 2.6226 9 7 2.5867 1.8110 2.0631 10 14 4.3697 2.0016 4.1760 11 1 5.5462 1.2020 4.6024 12 1 4.7931 3.3994 3.9069 13 1 3.3478 1.9927 5.2534 14 6 4.1634 -1.4627 0.2152 15 6 4.4410 -0.8046 -1.1597 16 6 3.2135 0.0337 -1.5946 17 7 1.9938 -0.6435 -1.2278 18 1 -0.3634 0.5139 0.8899 19 1 -0.3633 0.5137 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 1.6483 -0.0859 2.1012 22 1 1.6260 -1.6705 1.2794 23 1 2.1854 2.6012 2.4570 24 1 5.1162 -1.7826 0.6369 25 1 3.5545 -2.3509 0.0461 26 1 5.3138 -0.1563 -1.0818 27 1 4.6307 -1.5805 -1.9014 28 1 3.2487 1.0067 -1.1043 29 1 3.2362 0.1733 -2.6754 30 1 2.1547 -1.6288 -1.0812 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260651157.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:48 Heat of formation + Delta-G solvation = 10.524678 kcal Electronic energy + Delta-G solvation = -12222.277772 eV Core-core repulsion = 10245.496469 eV Total energy + Delta-G solvation = -1976.781303 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.15828 -35.80440 -34.37194 -32.82864 -29.35509 -27.44557 -26.49709 -24.13281 -21.71417 -20.92428 -18.70686 -17.12187 -16.15569 -16.01114 -15.73813 -15.47661 -14.60608 -14.21815 -13.76637 -13.29726 -13.24024 -12.85221 -12.72809 -12.42071 -12.20818 -12.06754 -11.89019 -11.72885 -11.34884 -10.95662 -10.57699 -9.28354 -8.67434 -7.87526 -5.30588 1.44343 1.47926 1.56766 2.50602 3.25913 3.55084 3.71010 4.18278 4.29235 4.42641 4.53274 4.70890 4.78479 4.87159 5.00348 5.08253 5.15551 5.20451 5.29987 5.35514 5.44839 5.57706 5.60150 5.74618 6.36157 6.42512 6.75073 7.12328 7.84022 8.34374 9.16907 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.044815 B = 0.017104 C = 0.014131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.638066 B = 1636.696486 C = 1980.933738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.061 3.939 3 H 0.071 0.929 4 C 0.146 3.854 5 N -0.607 5.607 6 C -0.267 4.267 7 H 0.060 0.940 8 C -0.041 4.041 9 N -0.915 5.915 10 Si 0.961 3.039 11 H -0.274 1.274 12 H -0.294 1.294 13 H -0.290 1.290 14 C 0.144 3.856 15 C -0.166 4.166 16 C 0.065 3.935 17 N -0.652 5.652 18 H 0.042 0.958 19 H 0.051 0.949 20 H 0.055 0.945 21 H 0.066 0.934 22 H 0.025 0.975 23 H 0.249 0.751 24 H 0.033 0.967 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.082 0.918 28 H 0.031 0.969 29 H 0.068 0.932 30 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.849 -4.665 -4.032 6.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.050 4.050 3 H 0.089 0.911 4 C 0.021 3.979 5 N -0.329 5.329 6 C -0.397 4.397 7 H 0.078 0.922 8 C -0.238 4.238 9 N -0.560 5.560 10 Si 0.790 3.210 11 H -0.199 1.199 12 H -0.222 1.222 13 H -0.216 1.216 14 C 0.015 3.985 15 C -0.208 4.208 16 C -0.066 4.066 17 N -0.280 5.280 18 H 0.061 0.939 19 H 0.070 0.930 20 H 0.074 0.926 21 H 0.084 0.916 22 H 0.043 0.957 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.050 0.950 29 H 0.086 0.914 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.366 -4.190 -4.418 6.240 hybrid contribution 1.105 0.490 1.550 1.966 sum -0.261 -3.701 -2.868 4.689 Atomic orbital electron populations 1.21662 0.95191 1.00990 1.00387 1.20977 0.95233 0.99782 0.89055 0.91088 1.20826 0.82299 0.95852 0.98898 1.44468 1.01959 1.51000 1.35483 1.19411 0.98037 1.03506 1.18769 0.92213 1.25589 0.99404 0.96454 1.02322 1.70115 1.25245 1.21417 1.39208 0.85321 0.77779 0.77499 0.80427 1.19850 1.22161 1.21641 1.20625 0.96185 0.92810 0.88837 1.23468 0.98297 1.00116 0.98967 1.21911 0.88764 0.96822 0.99073 1.61710 1.28029 1.07201 1.31083 0.93889 0.93000 0.92614 0.91559 0.95729 0.94149 0.94882 0.93669 0.93900 0.89902 0.95007 0.91390 0.84892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.58 9.36 71.98 0.67 -3.90 16 2 C 0.06 2.61 2.35 43.13 0.10 2.71 16 3 H 0.07 3.69 5.21 -2.39 -0.01 3.68 16 4 C 0.15 6.80 4.47 83.74 0.37 7.18 16 5 N -0.61 -29.83 2.63 -706.34 -1.86 -31.69 16 6 C -0.27 -14.55 9.61 84.03 0.81 -13.75 16 7 H 0.06 3.27 7.88 -2.91 -0.02 3.24 16 8 C -0.04 -2.25 4.91 84.86 0.42 -1.83 16 9 N -0.91 -51.25 9.61 21.65 0.21 -51.04 16 10 Si 0.96 44.53 29.60 68.60 2.03 46.56 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 13 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 14 C 0.14 5.87 5.20 87.57 0.46 6.33 16 15 C -0.17 -6.07 6.44 31.90 0.21 -5.86 16 16 C 0.07 2.53 6.32 87.44 0.55 3.08 16 17 N -0.65 -24.70 6.71 -505.83 -3.39 -28.09 16 18 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 19 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 20 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 21 H 0.07 3.50 6.02 -2.39 -0.01 3.49 16 22 H 0.02 1.05 8.14 -2.38 -0.02 1.04 16 23 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 24 H 0.03 1.36 7.97 -2.39 -0.02 1.34 16 25 H 0.05 1.65 6.98 -2.38 -0.02 1.64 16 26 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.03 1.50 6.61 -2.38 -0.02 1.49 16 29 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.33 11.76 6.53 -89.70 -0.59 11.18 16 Total: -1.00 -57.11 231.02 1.10 -56.01 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 0.53 Total: 14.29 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 3.59 Total: -6.04 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -5.05 Total: -110.83 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -57.11 1.10 -56.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260651157.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.536 kcal (2) G-P(sol) polarization free energy of solvation -57.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds