Wall clock time and date at job start Mon Mar 30 2020 02:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48821 * 110.96694 * 2 1 4 4 C 1.54385 * 104.46483 * 159.05574 * 3 2 1 5 5 H 1.09002 * 110.32550 * 95.06904 * 4 3 2 6 6 N 1.46904 * 110.32519 * 217.17731 * 4 3 2 7 7 C 1.54262 * 105.14590 * 336.12162 * 4 3 2 8 8 H 1.08997 * 110.32128 * 118.95254 * 7 4 3 9 9 C 1.53000 * 110.32338 * 241.05074 * 7 4 3 10 10 C 1.50694 * 109.47353 * 185.00181 * 9 7 4 11 11 H 1.07998 * 120.00084 * 0.02562 * 10 9 7 12 12 C 1.37881 * 119.99984 * 180.02562 * 10 9 7 13 13 N 1.31522 * 119.99587 * 180.02562 * 12 10 9 14 14 Si 1.86790 * 120.00140 * 359.97438 * 12 10 9 15 15 H 1.48494 * 109.47100 * 90.00400 * 14 12 10 16 16 H 1.48500 * 109.47236 * 210.00005 * 14 12 10 17 17 H 1.48503 * 109.47211 * 330.00035 * 14 12 10 18 18 C 1.48556 * 111.00051 * 115.41837 * 2 1 3 19 19 H 1.09000 * 109.46925 * 304.57884 * 1 2 3 20 20 H 1.08997 * 109.47152 * 64.57905 * 1 2 3 21 21 H 1.09001 * 109.46734 * 184.58341 * 1 2 3 22 22 H 1.09001 * 110.45345 * 40.32853 * 3 2 1 23 23 H 1.09001 * 110.49959 * 277.79615 * 3 2 1 24 24 H 1.00900 * 110.99461 * 297.16759 * 6 4 3 25 25 H 1.00901 * 111.00060 * 61.11819 * 6 4 3 26 26 H 1.09000 * 109.47579 * 305.00411 * 9 7 4 27 27 H 1.09011 * 109.47113 * 64.99969 * 9 7 4 28 28 H 0.96994 * 119.99560 * 179.97438 * 13 12 10 29 29 H 1.09009 * 110.40917 * 82.18820 * 18 2 1 30 30 H 1.08993 * 110.51593 * 319.79256 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0016 1.3897 0.0000 4 6 3.4432 1.2502 0.5344 5 1 4.1483 1.1749 -0.2935 6 7 3.7831 2.3946 1.3904 7 6 3.4433 -0.0539 1.3584 8 1 4.1484 -0.7692 0.9350 9 6 3.7973 0.2395 2.8176 10 6 3.9123 -1.0569 3.5772 11 1 3.7496 -1.9963 3.0698 12 6 4.2253 -1.0438 4.9200 13 7 4.3261 -2.1754 5.5827 14 14 4.5074 0.5809 5.7974 15 1 3.2200 1.0768 6.3468 16 1 5.4753 0.3831 6.9061 17 1 5.0512 1.5744 4.8369 18 6 2.0014 -0.5953 1.2526 19 1 -0.3633 0.5832 0.8461 20 1 -0.3633 0.4411 -0.9281 21 1 -0.3633 -1.0244 0.0821 22 1 1.4108 2.0239 0.6610 23 1 2.0088 1.7957 -1.0115 24 1 3.7633 3.2566 0.8663 25 1 3.1692 2.4432 2.1897 26 1 4.7476 0.7716 2.8611 27 1 3.0159 0.8544 3.2645 28 1 4.5466 -2.1661 6.5272 29 1 2.0080 -1.6832 1.1837 30 1 1.4105 -0.2731 2.1099 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260658338.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:28 Heat of formation + Delta-G solvation = 3.964715 kcal Electronic energy + Delta-G solvation = -11662.227702 eV Core-core repulsion = 9685.161938 eV Total energy + Delta-G solvation = -1977.065765 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.95947 -34.19177 -32.81848 -30.88495 -28.16796 -26.59701 -24.59119 -21.95345 -20.82836 -18.56071 -17.11673 -15.81127 -15.10718 -14.59228 -14.17071 -13.93157 -13.38382 -13.00566 -12.60029 -12.15220 -11.84630 -11.62700 -11.19023 -11.10116 -10.71047 -10.54920 -9.80375 -9.73051 -9.46117 -9.00790 -8.50322 -8.33906 -8.13921 -5.98021 -3.94925 3.34826 3.43381 3.51245 4.32962 4.52044 4.96900 5.11271 5.16450 5.37384 5.47505 5.57731 5.62172 5.82778 5.90229 5.96836 6.15010 6.28944 6.60215 6.66415 6.78844 7.12952 7.28478 7.40269 7.51846 7.63533 7.76222 7.93802 8.61171 9.07959 9.65348 11.15457 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.048576 B = 0.012741 C = 0.011135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.277399 B = 2197.070328 C = 2513.887692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.519 5.519 3 C -0.001 4.001 4 C 0.086 3.914 5 H 0.083 0.917 6 N -0.834 5.834 7 C -0.071 4.071 8 H 0.075 0.925 9 C 0.004 3.996 10 C -0.517 4.517 11 H 0.070 0.930 12 C 0.065 3.935 13 N -0.906 5.906 14 Si 0.876 3.124 15 H -0.281 1.281 16 H -0.290 1.290 17 H -0.258 1.258 18 C 0.045 3.955 19 H 0.024 0.976 20 H 0.061 0.939 21 H 0.067 0.933 22 H 0.037 0.963 23 H 0.071 0.929 24 H 0.328 0.672 25 H 0.344 0.656 26 H 0.037 0.963 27 H 0.002 0.998 28 H 0.261 0.739 29 H 0.079 0.921 30 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.401 8.097 -9.057 13.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.243 5.243 3 C -0.132 4.132 4 C -0.026 4.026 5 H 0.101 0.899 6 N -0.363 5.363 7 C -0.091 4.091 8 H 0.094 0.906 9 C -0.034 4.034 10 C -0.556 4.556 11 H 0.088 0.912 12 C -0.136 4.136 13 N -0.546 5.546 14 Si 0.704 3.296 15 H -0.207 1.207 16 H -0.216 1.216 17 H -0.183 1.183 18 C -0.082 4.082 19 H 0.043 0.957 20 H 0.080 0.920 21 H 0.086 0.914 22 H 0.055 0.945 23 H 0.090 0.910 24 H 0.140 0.860 25 H 0.158 0.842 26 H 0.055 0.945 27 H 0.021 0.979 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.494 7.358 -9.257 12.650 hybrid contribution -1.285 1.508 1.093 2.263 sum -5.779 8.866 -8.164 13.366 Atomic orbital electron populations 1.22470 0.88993 1.01807 1.00150 1.65439 1.07410 1.14503 1.36966 1.24083 0.97757 0.90844 1.00483 1.22325 0.92680 0.92489 0.95100 0.89875 1.58991 1.60725 1.05133 1.11486 1.21874 0.95248 0.93857 0.98079 0.90614 1.19478 0.96854 0.96974 0.90045 1.21225 1.47192 0.92925 0.94213 0.91158 1.25026 0.94901 0.96071 0.97573 1.69927 1.49634 1.25837 1.09191 0.86811 0.78125 0.85176 0.79493 1.20726 1.21649 1.18252 1.23181 0.95835 1.00166 0.88996 0.95743 0.92022 0.91385 0.94503 0.91041 0.86031 0.84159 0.94507 0.97942 0.92916 0.90228 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.53 60.07 0.57 0.78 16 2 N -0.52 -8.45 5.66 -238.00 -1.35 -9.80 16 3 C 0.00 -0.02 6.21 -2.03 -0.01 -0.03 16 4 C 0.09 1.43 4.18 -66.32 -0.28 1.15 16 5 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 6 N -0.83 -13.19 8.04 -3.49 -0.03 -13.22 16 7 C -0.07 -1.43 3.00 -89.24 -0.27 -1.70 16 8 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 9 C 0.00 0.10 2.31 -27.89 -0.06 0.04 16 10 C -0.52 -14.69 9.29 -34.44 -0.32 -15.01 16 11 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 12 C 0.06 1.90 5.47 -17.81 -0.10 1.81 16 13 N -0.91 -28.23 13.96 55.43 0.77 -27.45 16 14 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 17 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 18 C 0.05 0.86 5.67 -2.19 -0.01 0.85 16 19 H 0.02 0.33 7.98 -51.93 -0.41 -0.08 16 20 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 21 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.04 0.53 7.80 -51.93 -0.40 0.13 16 23 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.33 4.14 9.07 -39.29 -0.36 3.78 16 25 H 0.34 5.65 7.24 -39.29 -0.28 5.36 16 26 H 0.04 0.91 6.67 -51.93 -0.35 0.57 16 27 H 0.00 0.06 6.39 -51.92 -0.33 -0.28 16 28 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 29 H 0.08 1.57 8.14 -51.92 -0.42 1.15 16 30 H 0.05 0.94 7.59 -51.93 -0.39 0.55 16 LS Contribution 239.43 15.07 3.61 3.61 Total: -1.00 -30.58 239.43 -6.80 -37.38 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -4.65 Total: 4.33 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -0.48 Total: -12.12 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.60 Total: -50.47 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.58 -6.80 -37.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260658338.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.343 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds