Wall clock time and date at job start Mon Mar 30 2020 02:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00269 * 2 1 4 4 H 1.09003 * 109.47207 * 31.62130 * 3 2 1 5 5 C 1.50702 * 109.47519 * 151.62202 * 3 2 1 6 6 H 1.07995 * 120.00312 * 119.99950 * 5 3 2 7 7 C 1.37878 * 119.99679 * 300.00495 * 5 3 2 8 8 N 1.31515 * 120.00283 * 359.71963 * 7 5 3 9 9 Si 1.86796 * 119.99741 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47189 * 60.00159 * 9 7 5 11 11 H 1.48502 * 109.47200 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47324 * 299.99825 * 9 7 5 13 13 C 1.53003 * 109.47371 * 271.62449 * 3 2 1 14 14 C 1.52999 * 109.46801 * 302.16375 * 13 3 2 15 15 C 1.53780 * 113.61475 * 271.76832 * 14 13 3 16 16 C 1.53784 * 87.08059 * 220.02158 * 15 14 13 17 17 C 1.53776 * 87.08129 * 25.43510 * 16 15 14 18 18 H 1.08998 * 109.47308 * 175.44632 * 1 2 3 19 19 H 1.09003 * 109.46564 * 295.43641 * 1 2 3 20 20 H 1.08996 * 109.47390 * 55.43971 * 1 2 3 21 21 H 0.96998 * 119.99836 * 180.02562 * 8 7 5 22 22 H 1.08995 * 109.46971 * 62.16649 * 13 3 2 23 23 H 1.08997 * 109.47092 * 182.16336 * 13 3 2 24 24 H 1.08994 * 112.85117 * 43.08140 * 14 13 3 25 25 H 1.08997 * 113.61638 * 334.57256 * 15 14 13 26 26 H 1.08999 * 113.61131 * 105.47364 * 15 14 13 27 27 H 1.08994 * 113.61365 * 270.87876 * 16 15 14 28 28 H 1.09006 * 113.61139 * 139.98691 * 16 15 14 29 29 H 1.08998 * 113.61408 * 220.01686 * 17 16 15 30 30 H 1.09000 * 113.69522 * 89.12862 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3586 1.9933 0.5388 5 6 3.3566 1.2559 0.6753 6 1 4.2447 1.5401 0.1306 7 6 3.4544 0.8476 1.9886 8 7 2.3723 0.5067 2.6537 9 14 5.1233 0.7855 2.8254 10 1 5.7279 2.1420 2.8254 11 1 4.9581 0.3178 4.2252 12 1 6.0107 -0.1519 2.0913 13 6 2.1804 1.7880 -1.4419 14 6 3.0510 0.7939 -2.2130 15 6 4.5573 1.0864 -2.1117 16 6 4.6502 0.7122 -3.6004 17 6 3.1699 1.1131 -3.7126 18 1 -0.3634 -1.0244 -0.0816 19 1 -0.3632 0.4414 0.9281 20 1 -0.3634 0.5829 -0.8463 21 1 2.4411 0.2198 3.5777 22 1 1.2028 1.8607 -1.9184 23 1 2.6589 2.7673 -1.4432 24 1 2.7917 -0.2445 -2.0069 25 1 4.7863 2.1327 -1.9094 26 1 5.0921 0.4004 -1.4548 27 1 4.8296 -0.3489 -3.7735 28 1 5.3211 1.3545 -4.1710 29 1 2.5845 0.4487 -4.3482 30 1 3.0180 2.1665 -3.9482 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260658527.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:50 Heat of formation + Delta-G solvation = -57.917277 kcal Electronic energy + Delta-G solvation = -11762.542644 eV Core-core repulsion = 9750.500724 eV Total energy + Delta-G solvation = -2012.041920 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.92948 -37.94939 -34.53667 -32.08241 -28.12353 -26.87071 -26.14875 -24.86613 -21.72499 -20.09504 -18.64577 -16.90206 -16.66564 -16.20241 -15.51607 -15.34524 -14.98146 -14.11293 -13.91494 -13.17573 -13.13125 -12.79025 -12.67887 -12.57587 -12.18722 -11.97849 -11.63924 -11.44133 -11.08684 -10.82698 -10.69362 -10.39451 -9.72648 -8.09254 -6.23754 1.42009 1.44502 1.51203 2.44362 3.11251 3.88010 3.93825 3.98854 4.06351 4.18974 4.60996 4.72610 4.74099 4.86742 4.91746 4.95171 4.98304 5.00677 5.10278 5.18190 5.33201 5.34867 5.47031 5.64521 5.83085 5.88500 6.32309 6.81549 7.20715 7.49348 8.99795 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.034214 B = 0.016578 C = 0.011960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.181201 B = 1688.609033 C = 2340.536517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.397 6.397 3 C 0.211 3.789 4 H -0.022 1.022 5 C -0.533 4.533 6 H 0.079 0.921 7 C 0.018 3.982 8 N -0.907 5.907 9 Si 0.953 3.047 10 H -0.265 1.265 11 H -0.287 1.287 12 H -0.271 1.271 13 C -0.115 4.115 14 C -0.091 4.091 15 C -0.130 4.130 16 C -0.132 4.132 17 C -0.131 4.131 18 H 0.077 0.923 19 H 0.011 0.989 20 H 0.035 0.965 21 H 0.258 0.742 22 H 0.046 0.954 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.658 1.169 -9.362 9.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.316 6.316 3 C 0.156 3.844 4 H -0.005 1.005 5 C -0.570 4.570 6 H 0.097 0.903 7 C -0.182 4.182 8 N -0.546 5.546 9 Si 0.778 3.222 10 H -0.190 1.190 11 H -0.213 1.213 12 H -0.196 1.196 13 C -0.153 4.153 14 C -0.110 4.110 15 C -0.168 4.168 16 C -0.170 4.170 17 C -0.168 4.168 18 H 0.096 0.904 19 H 0.029 0.971 20 H 0.053 0.947 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.063 0.937 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.703 0.956 -9.204 9.409 hybrid contribution 0.213 0.056 1.049 1.072 sum 1.916 1.011 -8.155 8.438 Atomic orbital electron populations 1.22482 0.84226 1.01105 0.97874 1.88045 1.17404 1.31625 1.94542 1.19668 0.92442 0.81108 0.91214 1.00454 1.21675 0.94110 1.45017 0.96200 0.90294 1.25911 0.99746 0.94240 0.98343 1.70143 1.29864 1.44429 1.10136 0.85706 0.80362 0.78893 0.77223 1.18999 1.21315 1.19609 1.21923 0.98482 0.98344 0.96527 1.22175 0.95266 0.98702 0.94820 1.22892 0.96683 1.00662 0.96536 1.22799 0.96856 1.01459 0.95853 1.22959 0.96837 1.01616 0.95418 0.90399 0.97059 0.94694 0.93359 0.93506 0.92238 0.91610 0.90798 0.93713 0.90240 0.90222 0.91247 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.77 10.79 113.37 1.22 2.99 16 2 O -0.40 -21.15 8.86 -148.98 -1.32 -22.47 16 3 C 0.21 11.10 2.25 29.85 0.07 11.16 16 4 H -0.02 -1.28 7.85 -2.39 -0.02 -1.30 16 5 C -0.53 -29.70 8.12 25.60 0.21 -29.49 16 6 H 0.08 4.16 5.28 -2.91 -0.02 4.14 16 7 C 0.02 1.05 5.40 84.65 0.46 1.51 16 8 N -0.91 -54.96 12.85 21.45 0.28 -54.68 16 9 Si 0.95 44.47 29.54 68.60 2.03 46.49 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 13 C -0.12 -4.84 5.00 30.59 0.15 -4.69 16 14 C -0.09 -3.49 3.29 -10.27 -0.03 -3.52 16 15 C -0.13 -4.70 5.47 31.12 0.17 -4.53 16 16 C -0.13 -3.69 8.08 31.12 0.25 -3.44 16 17 C -0.13 -3.79 7.64 31.12 0.24 -3.55 16 18 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 19 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 20 H 0.03 1.34 7.69 -2.39 -0.02 1.32 16 21 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 22 H 0.05 1.81 7.73 -2.39 -0.02 1.79 16 23 H 0.06 2.41 7.83 -2.39 -0.02 2.39 16 24 H 0.07 2.86 7.41 -2.39 -0.02 2.84 16 25 H 0.07 2.62 7.76 -2.39 -0.02 2.60 16 26 H 0.04 1.78 7.87 -2.39 -0.02 1.76 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 2.25 8.10 -2.39 -0.02 2.23 16 Total: -1.00 -63.18 245.16 4.80 -58.38 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 1.09 Total: 5.83 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: 2.73 Total: -33.55 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.28 Total: -54.68 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -1.32 Total: -22.47 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -63.18 4.80 -58.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260658527.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.459 kcal (2) G-P(sol) polarization free energy of solvation -63.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds