Wall clock time and date at job start Mon Mar 30 2020 02:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42893 * 114.00367 * 2 1 4 4 C 1.53002 * 109.47399 * 179.97438 * 3 2 1 5 5 H 1.09006 * 110.01656 * 306.38880 * 4 3 2 6 6 C 1.53871 * 110.07407 * 67.81058 * 4 3 2 7 7 C 1.54263 * 106.60103 * 119.30738 * 6 4 3 8 8 C 1.54892 * 104.19410 * 23.60793 * 7 6 4 9 9 H 1.09003 * 110.91241 * 80.44772 * 8 7 6 10 10 C 1.50706 * 110.75421 * 203.74160 * 8 7 6 11 11 H 1.08000 * 119.99302 * 113.33230 * 10 8 7 12 12 C 1.37871 * 120.00436 * 293.05763 * 10 8 7 13 13 N 1.31515 * 119.99684 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00405 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47050 * 59.99579 * 14 12 10 16 16 H 1.48496 * 109.47289 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46492 * 299.99554 * 14 12 10 18 18 C 1.54270 * 110.03056 * 185.00105 * 4 3 2 19 19 H 1.09006 * 109.46922 * 60.00390 * 1 2 3 20 20 H 1.09003 * 109.47196 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47475 * 299.99956 * 1 2 3 22 22 H 1.09007 * 109.47096 * 59.99856 * 3 2 1 23 23 H 1.09001 * 109.47430 * 300.00073 * 3 2 1 24 24 H 1.09002 * 110.02958 * 238.59159 * 6 4 3 25 25 H 1.08999 * 110.03114 * 359.97404 * 6 4 3 26 26 H 1.09007 * 110.48634 * 264.93196 * 7 6 4 27 27 H 1.08992 * 110.48742 * 142.28719 * 7 6 4 28 28 H 0.97004 * 120.00247 * 180.02562 * 13 12 10 29 29 H 1.09001 * 110.48708 * 98.37962 * 18 4 3 30 30 H 1.08997 * 110.48558 * 335.73304 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8591 0.5495 0.8254 6 6 4.0194 0.5985 -1.3373 7 6 4.9373 1.6603 -1.9773 8 6 5.4306 2.5082 -0.7785 9 1 6.2514 2.0107 -0.2617 10 6 5.8439 3.8846 -1.2321 11 1 5.2791 4.7493 -0.9165 12 6 6.9463 4.0405 -2.0453 13 7 7.6375 2.9880 -2.4248 14 14 7.4589 5.7467 -2.6070 15 1 7.7660 6.5866 -1.4215 16 1 8.6659 5.6433 -3.4658 17 1 6.3526 6.3666 -3.3797 18 6 4.1762 2.5822 0.1270 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 1.6886 1.8463 0.8900 23 1 1.6887 1.8464 -0.8900 24 1 4.5779 -0.3210 -1.1618 25 1 3.1676 0.3994 -1.9875 26 1 4.3750 2.2792 -2.6765 27 1 5.7791 1.1840 -2.4796 28 1 8.4133 3.0976 -2.9967 29 1 4.4626 2.7785 1.1602 30 1 3.4910 3.3498 -0.2324 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260664941.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:18 Heat of formation + Delta-G solvation = -72.814606 kcal Electronic energy + Delta-G solvation = -11372.727173 eV Core-core repulsion = 9360.039255 eV Total energy + Delta-G solvation = -2012.687917 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.22652 -36.42462 -32.56925 -29.50472 -27.94625 -26.47876 -24.49849 -22.95309 -19.17783 -18.86151 -16.33762 -16.00983 -15.70094 -14.72021 -14.55196 -14.16815 -13.02349 -12.39719 -12.21539 -11.92313 -11.59493 -11.11749 -10.95042 -10.64127 -10.49891 -10.21954 -9.82126 -9.65319 -9.43795 -9.33392 -9.06908 -8.72788 -8.30684 -5.95177 -3.97759 3.34971 3.39677 3.41955 4.04676 4.48813 5.30536 5.32759 5.38264 5.47486 5.57234 5.67740 5.73717 5.95647 6.06536 6.27710 6.49581 6.72184 6.79162 6.90709 6.95845 7.06135 7.36602 7.40280 7.48362 7.77395 7.95754 8.10264 8.52094 9.05018 9.65781 11.14707 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.085376 B = 0.008844 C = 0.008497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.883104 B = 3165.322947 C = 3294.418749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.070 3.930 4 C -0.091 4.091 5 H 0.066 0.934 6 C -0.116 4.116 7 C -0.105 4.105 8 C 0.050 3.950 9 H 0.033 0.967 10 C -0.514 4.514 11 H 0.054 0.946 12 C 0.062 3.938 13 N -0.891 5.891 14 Si 0.889 3.111 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.278 1.278 18 C -0.110 4.110 19 H 0.037 0.963 20 H 0.080 0.920 21 H 0.036 0.964 22 H 0.041 0.959 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.260 0.740 29 H 0.047 0.953 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.937 -3.242 3.181 10.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.006 4.006 4 C -0.109 4.109 5 H 0.084 0.916 6 C -0.154 4.154 7 C -0.143 4.143 8 C 0.032 3.968 9 H 0.051 0.949 10 C -0.552 4.552 11 H 0.072 0.928 12 C -0.140 4.140 13 N -0.529 5.529 14 Si 0.717 3.283 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.204 1.204 18 C -0.148 4.148 19 H 0.056 0.944 20 H 0.098 0.902 21 H 0.055 0.945 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.663 -3.462 3.070 10.714 hybrid contribution 0.051 1.140 -0.375 1.201 sum -9.612 -2.322 2.695 10.249 Atomic orbital electron populations 1.22674 0.82131 1.02100 0.99606 1.87900 1.18761 1.29135 1.95332 1.22789 0.94817 0.83572 0.99454 1.21840 0.91181 0.98957 0.98945 0.91555 1.22227 0.98876 0.98939 0.95369 1.22341 0.97027 0.95597 0.99314 1.19563 0.91069 0.95159 0.91038 0.94903 1.21114 1.11606 0.92474 1.29984 0.92798 1.24984 0.96317 0.96418 0.96239 1.69956 1.18505 1.28706 1.35728 0.86716 0.77922 0.85024 0.78654 1.20341 1.21357 1.20355 1.22476 0.99295 0.93249 0.99774 0.94403 0.90161 0.94544 0.94030 0.93356 0.93247 0.93406 0.93686 0.91852 0.93069 0.93396 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.49 16 2 O -0.39 -6.37 10.52 -35.23 -0.37 -6.74 16 3 C 0.07 1.15 4.94 37.16 0.18 1.33 16 4 C -0.09 -1.72 3.18 -89.50 -0.29 -2.00 16 5 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 6 C -0.12 -2.36 6.32 -25.62 -0.16 -2.52 16 7 C -0.10 -2.52 5.77 -25.07 -0.14 -2.66 16 8 C 0.05 1.28 2.72 -89.78 -0.24 1.03 16 9 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 10 C -0.51 -14.33 8.49 -34.44 -0.29 -14.62 16 11 H 0.05 1.47 7.77 -52.49 -0.41 1.07 16 12 C 0.06 1.75 5.36 -17.82 -0.10 1.65 16 13 N -0.89 -26.10 12.44 55.43 0.69 -25.41 16 14 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C -0.11 -2.32 5.77 -25.07 -0.14 -2.47 16 19 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 20 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 21 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.05 0.92 7.64 -51.93 -0.40 0.52 16 26 H 0.04 1.10 8.04 -51.92 -0.42 0.69 16 27 H 0.06 1.65 7.65 -51.93 -0.40 1.25 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 1.14 7.75 -51.93 -0.40 0.74 16 LS Contribution 247.82 15.07 3.73 3.73 Total: -1.00 -29.23 247.82 -6.00 -35.23 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -4.96 Total: -4.55 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -0.07 Total: -18.77 kcal Atomic # 7 Polarization: -26.10 SS G_CDS: 0.69 Total: -25.41 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.37 Total: -6.74 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.23 -6.00 -35.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260664941.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.588 kcal (2) G-P(sol) polarization free energy of solvation -29.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds