Wall clock time and date at job start Mon Mar 30 2020 02:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42893 * 114.00367 * 2 1 4 4 C 1.53002 * 109.47399 * 179.97438 * 3 2 1 5 5 H 1.09006 * 110.01656 * 306.38880 * 4 3 2 6 6 C 1.53871 * 110.07407 * 67.81058 * 4 3 2 7 7 C 1.54263 * 106.60103 * 119.30738 * 6 4 3 8 8 C 1.54892 * 104.19410 * 23.60793 * 7 6 4 9 9 H 1.09003 * 110.91241 * 80.44772 * 8 7 6 10 10 C 1.50706 * 110.75421 * 203.74160 * 8 7 6 11 11 H 1.08000 * 119.99302 * 113.33230 * 10 8 7 12 12 C 1.37871 * 120.00436 * 293.05763 * 10 8 7 13 13 N 1.31515 * 119.99684 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00405 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47050 * 59.99579 * 14 12 10 16 16 H 1.48496 * 109.47289 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46492 * 299.99554 * 14 12 10 18 18 C 1.54270 * 110.03056 * 185.00105 * 4 3 2 19 19 H 1.09006 * 109.46922 * 60.00390 * 1 2 3 20 20 H 1.09003 * 109.47196 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47475 * 299.99956 * 1 2 3 22 22 H 1.09007 * 109.47096 * 59.99856 * 3 2 1 23 23 H 1.09001 * 109.47430 * 300.00073 * 3 2 1 24 24 H 1.09002 * 110.02958 * 238.59159 * 6 4 3 25 25 H 1.08999 * 110.03114 * 359.97404 * 6 4 3 26 26 H 1.09007 * 110.48634 * 264.93196 * 7 6 4 27 27 H 1.08992 * 110.48742 * 142.28719 * 7 6 4 28 28 H 0.97004 * 120.00247 * 180.02562 * 13 12 10 29 29 H 1.09001 * 110.48708 * 98.37962 * 18 4 3 30 30 H 1.08997 * 110.48558 * 335.73304 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8591 0.5495 0.8254 6 6 4.0194 0.5985 -1.3373 7 6 4.9373 1.6603 -1.9773 8 6 5.4306 2.5082 -0.7785 9 1 6.2514 2.0107 -0.2617 10 6 5.8439 3.8846 -1.2321 11 1 5.2791 4.7493 -0.9165 12 6 6.9463 4.0405 -2.0453 13 7 7.6375 2.9880 -2.4248 14 14 7.4589 5.7467 -2.6070 15 1 7.7660 6.5866 -1.4215 16 1 8.6659 5.6433 -3.4658 17 1 6.3526 6.3666 -3.3797 18 6 4.1762 2.5822 0.1270 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 1.6886 1.8463 0.8900 23 1 1.6887 1.8464 -0.8900 24 1 4.5779 -0.3210 -1.1618 25 1 3.1676 0.3994 -1.9875 26 1 4.3750 2.2792 -2.6765 27 1 5.7791 1.1840 -2.4796 28 1 8.4133 3.0976 -2.9967 29 1 4.4626 2.7785 1.1602 30 1 3.4910 3.3498 -0.2324 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260664941.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:18 Heat of formation + Delta-G solvation = -90.390445 kcal Electronic energy + Delta-G solvation = -11373.489318 eV Core-core repulsion = 9360.039255 eV Total energy + Delta-G solvation = -2013.450063 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.67372 -37.90720 -34.61629 -31.18053 -29.75714 -27.69409 -26.20833 -24.58705 -21.11462 -20.47148 -18.35599 -17.31696 -16.93824 -16.56165 -15.94996 -15.74714 -14.77080 -14.08149 -13.83204 -13.41061 -13.18192 -12.91454 -12.63464 -12.38761 -12.24023 -11.76489 -11.50746 -11.46561 -11.15952 -10.98926 -10.80693 -10.52313 -10.44264 -8.10298 -6.20322 1.42290 1.43984 1.51574 2.44620 2.91854 3.20485 3.93680 4.01260 4.18048 4.48569 4.51075 4.59335 4.64334 4.73741 4.81719 4.87230 4.97473 5.08345 5.19732 5.23757 5.31764 5.44010 5.62722 5.66283 5.94211 6.01133 6.31702 6.40706 6.91127 7.47150 8.99079 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.085376 B = 0.008844 C = 0.008497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.883104 B = 3165.322947 C = 3294.418749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.415 6.415 3 C 0.077 3.923 4 C -0.086 4.086 5 H 0.071 0.929 6 C -0.107 4.107 7 C -0.097 4.097 8 C 0.037 3.963 9 H 0.000 1.000 10 C -0.532 4.532 11 H 0.056 0.944 12 C 0.009 3.991 13 N -0.923 5.923 14 Si 0.955 3.045 15 H -0.270 1.270 16 H -0.286 1.286 17 H -0.270 1.270 18 C -0.100 4.100 19 H 0.045 0.955 20 H 0.098 0.902 21 H 0.051 0.949 22 H 0.061 0.939 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.260 0.740 29 H 0.057 0.943 30 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.492 -2.749 3.635 12.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.335 6.335 3 C 0.001 3.999 4 C -0.104 4.104 5 H 0.090 0.910 6 C -0.145 4.145 7 C -0.136 4.136 8 C 0.019 3.981 9 H 0.018 0.982 10 C -0.571 4.571 11 H 0.074 0.926 12 C -0.190 4.190 13 N -0.563 5.563 14 Si 0.780 3.220 15 H -0.195 1.195 16 H -0.211 1.211 17 H -0.195 1.195 18 C -0.138 4.138 19 H 0.064 0.936 20 H 0.116 0.884 21 H 0.070 0.930 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.239 -2.970 3.534 12.150 hybrid contribution 0.523 0.946 -0.505 1.193 sum -10.717 -2.023 3.029 11.319 Atomic orbital electron populations 1.22927 0.79760 1.03750 1.00734 1.87849 1.21316 1.28743 1.95548 1.22600 0.92700 0.84163 1.00469 1.21725 0.93412 0.97291 0.97999 0.91043 1.22125 0.98444 0.97698 0.96226 1.22152 0.96584 0.96221 0.98599 1.19572 0.92111 0.94136 0.92305 0.98220 1.21523 1.11892 0.93639 1.29996 0.92582 1.25818 0.96439 1.00301 0.96409 1.70098 1.18922 1.30857 1.36383 0.85661 0.77614 0.80323 0.78369 1.19478 1.21130 1.19499 1.22315 0.97331 0.94932 0.99217 0.93609 0.88377 0.93038 0.92118 0.93258 0.93055 0.92030 0.94754 0.94868 0.93139 0.92429 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 11.01 113.37 1.25 1.74 16 2 O -0.41 -12.27 10.52 -148.98 -1.57 -13.84 16 3 C 0.08 2.31 4.94 71.98 0.36 2.67 16 4 C -0.09 -3.10 3.18 -10.07 -0.03 -3.13 16 5 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 6 C -0.11 -4.27 6.32 31.32 0.20 -4.07 16 7 C -0.10 -4.76 5.77 31.67 0.18 -4.58 16 8 C 0.04 1.93 2.72 -10.25 -0.03 1.90 16 9 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 10 C -0.53 -29.94 8.49 25.60 0.22 -29.72 16 11 H 0.06 3.04 7.77 -2.91 -0.02 3.02 16 12 C 0.01 0.49 5.36 84.65 0.45 0.95 16 13 N -0.92 -55.32 12.44 21.45 0.27 -55.06 16 14 Si 0.95 44.24 29.54 68.60 2.03 46.26 16 15 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 16 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 C -0.10 -4.12 5.77 31.67 0.18 -3.94 16 19 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 20 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 21 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 22 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 23 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.06 2.27 7.64 -2.39 -0.02 2.25 16 26 H 0.03 1.70 8.04 -2.38 -0.02 1.68 16 27 H 0.03 1.78 7.65 -2.39 -0.02 1.76 16 28 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 29 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.06 2.39 7.75 -2.39 -0.02 2.37 16 Total: -1.00 -62.32 247.82 4.58 -57.74 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: 1.08 Total: 3.08 kcal Atomic # 6 Polarization: -40.96 SS G_CDS: 2.78 Total: -38.18 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.27 Total: -55.06 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -1.57 Total: -13.84 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -62.32 4.58 -57.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260664941.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.655 kcal (2) G-P(sol) polarization free energy of solvation -62.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds