Wall clock time and date at job start Mon Mar 30 2020 02:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00455 * 2 1 4 4 C 1.52995 * 109.47518 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47201 * 305.97005 * 4 3 2 6 6 C 1.50698 * 109.47261 * 185.97134 * 4 3 2 7 7 H 1.08006 * 119.99640 * 275.01511 * 6 4 3 8 8 C 1.37878 * 120.00090 * 95.01807 * 6 4 3 9 9 N 1.31515 * 119.99868 * 184.84316 * 8 6 4 10 10 Si 1.86792 * 120.00107 * 4.83883 * 8 6 4 11 11 H 1.48501 * 109.47260 * 84.86833 * 10 8 6 12 12 H 1.48502 * 109.47510 * 204.87254 * 10 8 6 13 13 H 1.48501 * 109.47203 * 324.87001 * 10 8 6 14 14 C 1.53003 * 109.46857 * 65.96949 * 4 3 2 15 15 C 1.53778 * 113.61554 * 299.99921 * 14 4 3 16 16 C 1.53781 * 87.08472 * 220.02047 * 15 14 4 17 17 C 1.53790 * 87.16920 * 25.39100 * 16 15 14 18 18 H 1.08994 * 109.47413 * 300.00045 * 1 2 3 19 19 H 1.09008 * 109.46530 * 60.00092 * 1 2 3 20 20 H 1.08995 * 109.47086 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46520 * 59.99698 * 3 2 1 22 22 H 1.08997 * 109.47296 * 300.00294 * 3 2 1 23 23 H 0.97001 * 120.00013 * 180.02562 * 9 8 6 24 24 H 1.08994 * 112.85014 * 71.19674 * 14 4 3 25 25 H 1.08998 * 113.61892 * 105.47282 * 15 14 4 26 26 H 1.09010 * 113.61413 * 334.56642 * 15 14 4 27 27 H 1.08998 * 113.61423 * 139.97743 * 16 15 14 28 28 H 1.09003 * 113.61396 * 270.80502 * 16 15 14 29 29 H 1.09002 * 113.61208 * 89.16319 * 17 16 15 30 30 H 1.08998 * 113.61222 * 220.05927 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8497 0.5543 0.8327 6 6 4.1478 2.5536 0.1485 7 1 4.3005 3.1737 -0.7226 8 6 4.5131 3.0145 1.3955 9 7 4.9586 4.2437 1.5378 10 14 4.3752 1.8931 2.8830 11 1 5.5979 1.0568 2.9876 12 1 4.2311 2.7152 4.1112 13 1 3.1867 1.0154 2.7327 14 6 3.9980 0.5585 -1.3166 15 6 3.4264 -0.8474 -1.5646 16 6 4.8119 -1.2285 -2.1123 17 6 5.3846 -0.1050 -1.2320 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5139 -0.8901 20 1 -0.3633 -1.0276 -0.0005 21 1 1.6886 1.8463 0.8900 22 1 1.6887 1.8464 -0.8899 23 1 5.2160 4.5678 2.4151 24 1 3.8870 1.2312 -2.1669 25 1 2.6378 -0.8718 -2.3166 26 1 3.1575 -1.3769 -0.6504 27 1 5.1394 -2.2251 -1.8162 28 1 4.9242 -1.0461 -3.1811 29 1 5.6521 -0.4312 -0.2270 30 1 6.1747 0.4691 -1.7161 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260772593.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:26 Heat of formation + Delta-G solvation = -41.358097 kcal Electronic energy + Delta-G solvation = -11738.297741 eV Core-core repulsion = 9726.973881 eV Total energy + Delta-G solvation = -2011.323860 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.44017 -36.61040 -33.11576 -30.66134 -26.48820 -24.80259 -24.31472 -23.84805 -19.93999 -18.60320 -16.86414 -15.49231 -15.14740 -14.77193 -14.39646 -13.85493 -13.59329 -12.45475 -12.02681 -11.76553 -11.62066 -11.48784 -11.04140 -10.82262 -10.80314 -10.14490 -9.89823 -9.60058 -9.27928 -9.23251 -9.00027 -8.70126 -8.45927 -6.10572 -4.10402 3.29886 3.37914 3.44047 4.41595 4.57985 5.28083 5.47203 5.50138 5.59351 5.74442 5.76751 5.87609 5.99708 6.17710 6.26006 6.42471 6.50543 6.58172 6.66352 6.71114 6.84800 6.98183 7.21891 7.23252 7.51643 7.71461 8.02855 8.52567 8.96100 9.53160 11.02163 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.031065 B = 0.017739 C = 0.013503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.128536 B = 1578.062098 C = 2073.076587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.394 6.394 3 C 0.067 3.933 4 C 0.029 3.971 5 H 0.038 0.962 6 C -0.508 4.508 7 H 0.074 0.926 8 C 0.073 3.927 9 N -0.898 5.898 10 Si 0.872 3.128 11 H -0.274 1.274 12 H -0.290 1.290 13 H -0.261 1.261 14 C -0.084 4.084 15 C -0.124 4.124 16 C -0.153 4.153 17 C -0.126 4.126 18 H 0.030 0.970 19 H 0.031 0.969 20 H 0.072 0.928 21 H 0.037 0.963 22 H 0.036 0.964 23 H 0.264 0.736 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.651 -8.645 -3.227 10.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.313 6.313 3 C -0.009 4.009 4 C 0.010 3.990 5 H 0.057 0.943 6 C -0.546 4.546 7 H 0.092 0.908 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.700 3.300 11 H -0.200 1.200 12 H -0.217 1.217 13 H -0.186 1.186 14 C -0.103 4.103 15 C -0.162 4.162 16 C -0.190 4.190 17 C -0.163 4.163 18 H 0.049 0.951 19 H 0.050 0.950 20 H 0.090 0.910 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.074 0.926 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.463 -8.659 -3.092 10.221 hybrid contribution -0.283 -0.096 0.884 0.933 sum -4.746 -8.756 -2.208 10.201 Atomic orbital electron populations 1.22587 0.83747 1.01139 0.99125 1.87947 1.17481 1.30660 1.95236 1.23258 0.96889 0.82118 0.98677 1.19179 0.89018 0.96989 0.93859 0.94344 1.20910 1.39756 0.99098 0.94792 0.90753 1.25090 0.94381 0.94727 0.98716 1.69910 1.44041 1.15572 1.23983 0.86917 0.79630 0.81167 0.82331 1.19980 1.21653 1.18580 1.22427 0.94733 0.94079 0.99033 1.22882 0.94540 0.98358 1.00386 1.22932 0.98837 0.98221 0.99010 1.22807 0.97668 0.96658 0.99180 0.95094 0.95004 0.90974 0.94489 0.94534 0.92598 0.90785 0.93108 0.90002 0.92817 0.91348 0.90929 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.39 -7.84 8.05 -35.23 -0.28 -8.13 16 3 C 0.07 1.47 5.26 37.16 0.20 1.67 16 4 C 0.03 0.68 1.52 -91.77 -0.14 0.54 16 5 H 0.04 0.95 5.10 -51.92 -0.27 0.69 16 6 C -0.51 -14.09 8.85 -34.44 -0.30 -14.39 16 7 H 0.07 2.23 8.06 -52.48 -0.42 1.81 16 8 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 9 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 10 Si 0.87 21.73 26.99 -169.99 -4.59 17.14 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.26 -6.38 6.82 56.52 0.39 -5.99 16 14 C -0.08 -1.76 3.11 -89.72 -0.28 -2.04 16 15 C -0.12 -2.26 5.98 -25.92 -0.15 -2.41 16 16 C -0.15 -2.50 8.08 -25.91 -0.21 -2.71 16 17 C -0.13 -2.42 7.64 -25.82 -0.20 -2.62 16 18 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 19 H 0.03 0.45 8.14 -51.92 -0.42 0.03 16 20 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 21 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.08 1.56 7.16 -51.92 -0.37 1.18 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.44 7.97 -51.93 -0.41 1.02 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 244.96 15.07 3.69 3.69 Total: -1.00 -29.31 244.96 -5.33 -34.65 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -4.85 Total: -2.56 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -0.07 Total: -18.37 kcal Atomic # 7 Polarization: -27.20 SS G_CDS: 0.77 Total: -26.42 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -0.28 Total: -8.13 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.59 Total: 17.14 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.31 -5.33 -34.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260772593.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.712 kcal (2) G-P(sol) polarization free energy of solvation -29.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds