Wall clock time and date at job start Mon Mar 30 2020 02:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00455 * 2 1 4 4 C 1.52995 * 109.47518 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47201 * 305.97005 * 4 3 2 6 6 C 1.50698 * 109.47261 * 185.97134 * 4 3 2 7 7 H 1.08006 * 119.99640 * 275.01511 * 6 4 3 8 8 C 1.37878 * 120.00090 * 95.01807 * 6 4 3 9 9 N 1.31515 * 119.99868 * 184.84316 * 8 6 4 10 10 Si 1.86792 * 120.00107 * 4.83883 * 8 6 4 11 11 H 1.48501 * 109.47260 * 84.86833 * 10 8 6 12 12 H 1.48502 * 109.47510 * 204.87254 * 10 8 6 13 13 H 1.48501 * 109.47203 * 324.87001 * 10 8 6 14 14 C 1.53003 * 109.46857 * 65.96949 * 4 3 2 15 15 C 1.53778 * 113.61554 * 299.99921 * 14 4 3 16 16 C 1.53781 * 87.08472 * 220.02047 * 15 14 4 17 17 C 1.53790 * 87.16920 * 25.39100 * 16 15 14 18 18 H 1.08994 * 109.47413 * 300.00045 * 1 2 3 19 19 H 1.09008 * 109.46530 * 60.00092 * 1 2 3 20 20 H 1.08995 * 109.47086 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46520 * 59.99698 * 3 2 1 22 22 H 1.08997 * 109.47296 * 300.00294 * 3 2 1 23 23 H 0.97001 * 120.00013 * 180.02562 * 9 8 6 24 24 H 1.08994 * 112.85014 * 71.19674 * 14 4 3 25 25 H 1.08998 * 113.61892 * 105.47282 * 15 14 4 26 26 H 1.09010 * 113.61413 * 334.56642 * 15 14 4 27 27 H 1.08998 * 113.61423 * 139.97743 * 16 15 14 28 28 H 1.09003 * 113.61396 * 270.80502 * 16 15 14 29 29 H 1.09002 * 113.61208 * 89.16319 * 17 16 15 30 30 H 1.08998 * 113.61222 * 220.05927 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8497 0.5543 0.8327 6 6 4.1478 2.5536 0.1485 7 1 4.3005 3.1737 -0.7226 8 6 4.5131 3.0145 1.3955 9 7 4.9586 4.2437 1.5378 10 14 4.3752 1.8931 2.8830 11 1 5.5979 1.0568 2.9876 12 1 4.2311 2.7152 4.1112 13 1 3.1867 1.0154 2.7327 14 6 3.9980 0.5585 -1.3166 15 6 3.4264 -0.8474 -1.5646 16 6 4.8119 -1.2285 -2.1123 17 6 5.3846 -0.1050 -1.2320 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5139 -0.8901 20 1 -0.3633 -1.0276 -0.0005 21 1 1.6886 1.8463 0.8900 22 1 1.6887 1.8464 -0.8899 23 1 5.2160 4.5678 2.4151 24 1 3.8870 1.2312 -2.1669 25 1 2.6378 -0.8718 -2.3166 26 1 3.1575 -1.3769 -0.6504 27 1 5.1394 -2.2251 -1.8162 28 1 4.9242 -1.0461 -3.1811 29 1 5.6521 -0.4312 -0.2270 30 1 6.1747 0.4691 -1.7161 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260772593.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:26 Heat of formation + Delta-G solvation = -59.453476 kcal Electronic energy + Delta-G solvation = -11739.082416 eV Core-core repulsion = 9726.973881 eV Total energy + Delta-G solvation = -2012.108535 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.02816 -38.11897 -35.16281 -32.58789 -27.98478 -26.35670 -26.01241 -25.50519 -21.70796 -20.23737 -18.90422 -17.14574 -16.76010 -16.31990 -16.15749 -15.37028 -15.25875 -14.47828 -13.60299 -13.32949 -13.27582 -13.05815 -12.82035 -12.60491 -12.23148 -11.91549 -11.68513 -11.33836 -11.08631 -10.95616 -10.70149 -10.55845 -10.24839 -8.31742 -6.35328 1.32350 1.34448 1.46143 2.32740 2.88168 3.32472 3.98269 4.02629 4.09621 4.29120 4.46858 4.51968 4.61370 4.69818 4.83996 4.85848 4.96720 5.06201 5.12272 5.20218 5.29318 5.32048 5.47622 5.59871 5.71305 5.89142 6.27696 6.49195 6.73483 7.31296 8.84746 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.031065 B = 0.017739 C = 0.013503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.128536 B = 1578.062098 C = 2073.076587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.402 6.402 3 C 0.078 3.922 4 C 0.027 3.973 5 H 0.032 0.968 6 C -0.508 4.508 7 H 0.036 0.964 8 C 0.019 3.981 9 N -0.945 5.945 10 Si 0.934 3.066 11 H -0.265 1.265 12 H -0.286 1.286 13 H -0.252 1.252 14 C -0.098 4.098 15 C -0.112 4.112 16 C -0.131 4.131 17 C -0.135 4.135 18 H 0.034 0.966 19 H 0.044 0.956 20 H 0.102 0.898 21 H 0.021 0.979 22 H 0.037 0.963 23 H 0.266 0.734 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.518 -11.020 -3.339 12.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.322 6.322 3 C 0.001 3.999 4 C 0.008 3.992 5 H 0.050 0.950 6 C -0.545 4.545 7 H 0.054 0.946 8 C -0.179 4.179 9 N -0.585 5.585 10 Si 0.758 3.242 11 H -0.190 1.190 12 H -0.212 1.212 13 H -0.176 1.176 14 C -0.117 4.117 15 C -0.149 4.149 16 C -0.169 4.169 17 C -0.172 4.172 18 H 0.053 0.947 19 H 0.062 0.938 20 H 0.121 0.879 21 H 0.040 0.960 22 H 0.056 0.944 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.345 -11.054 -3.218 12.693 hybrid contribution -0.070 0.675 0.839 1.079 sum -5.414 -10.380 -2.379 11.946 Atomic orbital electron populations 1.22882 0.81098 1.03450 0.99957 1.87892 1.20225 1.28734 1.95327 1.22828 0.95795 0.83222 0.98030 1.19122 0.90235 0.94501 0.95366 0.95023 1.21117 1.39493 1.00483 0.93455 0.94612 1.25875 0.94311 0.95969 1.01763 1.70042 1.46028 1.17543 1.24844 0.85932 0.80174 0.79394 0.78694 1.18997 1.21225 1.17567 1.22459 0.96670 0.95508 0.97049 1.22754 0.95934 0.95676 1.00580 1.22844 0.96533 0.98110 0.99380 1.22858 0.96737 0.97992 0.99652 0.94684 0.93772 0.87941 0.96020 0.94425 0.92454 0.91676 0.91895 0.90560 0.90594 0.89562 0.91721 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 11.01 113.37 1.25 1.87 16 2 O -0.40 -15.03 8.05 -148.98 -1.20 -16.23 16 3 C 0.08 3.37 5.26 71.98 0.38 3.75 16 4 C 0.03 1.27 1.52 -11.54 -0.02 1.25 16 5 H 0.03 1.54 5.10 -2.38 -0.01 1.52 16 6 C -0.51 -28.88 8.85 25.60 0.23 -28.65 16 7 H 0.04 2.25 8.06 -2.91 -0.02 2.22 16 8 C 0.02 1.08 5.47 84.65 0.46 1.54 16 9 N -0.94 -58.82 13.96 21.45 0.30 -58.52 16 10 Si 0.93 44.95 26.99 68.60 1.85 46.80 16 11 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 13 H -0.25 -11.62 6.82 99.48 0.68 -10.95 16 14 C -0.10 -4.01 3.11 -10.21 -0.03 -4.05 16 15 C -0.11 -3.75 5.98 31.12 0.19 -3.56 16 16 C -0.13 -3.86 8.08 31.12 0.25 -3.61 16 17 C -0.13 -5.02 7.64 31.18 0.24 -4.78 16 18 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 19 H 0.04 1.12 8.14 -2.38 -0.02 1.11 16 20 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 21 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 24 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 25 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.08 2.66 7.16 -2.38 -0.02 2.65 16 27 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.06 2.48 7.97 -2.39 -0.02 2.46 16 30 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -63.21 244.96 4.95 -58.26 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 1.06 Total: 5.94 kcal Atomic # 6 Polarization: -39.18 SS G_CDS: 2.94 Total: -36.24 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.30 Total: -58.52 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -1.20 Total: -16.23 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.85 Total: 46.80 kcal Total: -63.21 4.95 -58.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260772593.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.196 kcal (2) G-P(sol) polarization free energy of solvation -63.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds