Wall clock time and date at job start Mon Mar 30 2020 02:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 111.00069 * 2 1 4 4 C 1.50698 * 110.27476 * 299.37679 * 3 2 1 5 5 H 1.08003 * 120.00144 * 123.08973 * 4 3 2 6 6 C 1.37877 * 120.00122 * 303.07981 * 4 3 2 7 7 N 1.31523 * 119.99728 * 355.24863 * 6 4 3 8 8 Si 1.86797 * 120.00405 * 175.24299 * 6 4 3 9 9 H 1.48505 * 109.46940 * 60.00363 * 8 6 4 10 10 H 1.48496 * 109.47197 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47191 * 300.00514 * 8 6 4 12 12 C 1.54605 * 110.30550 * 61.56632 * 3 2 1 13 13 C 1.54939 * 102.91527 * 140.87290 * 12 3 2 14 14 N 1.48525 * 103.23336 * 322.58618 * 13 12 3 15 15 C 1.46892 * 111.00419 * 159.72180 * 14 13 12 16 16 C 1.47903 * 105.81997 * 39.20863 * 14 13 12 17 17 H 1.09001 * 109.47444 * 184.18930 * 1 2 3 18 18 H 1.08996 * 109.47478 * 304.18894 * 1 2 3 19 19 H 1.09004 * 109.46901 * 64.18935 * 1 2 3 20 20 H 1.00901 * 110.99861 * 123.96022 * 2 1 3 21 21 H 0.96996 * 119.99601 * 180.02562 * 7 6 4 22 22 H 1.08994 * 110.72585 * 259.22609 * 12 3 2 23 23 H 1.08992 * 110.72250 * 22.51889 * 12 3 2 24 24 H 1.09001 * 110.66177 * 204.14724 * 13 12 3 25 25 H 1.09005 * 110.66812 * 81.02419 * 13 12 3 26 26 H 1.09005 * 109.47412 * 302.60630 * 15 14 13 27 27 H 1.09004 * 109.47526 * 62.60533 * 15 14 13 28 28 H 1.09004 * 109.47804 * 182.60344 * 15 14 13 29 29 H 1.09000 * 109.91712 * 94.02431 * 16 14 13 30 30 H 1.08997 * 109.91867 * 215.32279 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.5352 2.1074 -1.2318 5 1 0.9855 3.0320 -1.1347 6 6 1.8161 1.6007 -2.4830 7 7 2.5649 0.5262 -2.6043 8 14 1.1331 2.4399 -4.0056 9 1 1.6300 3.8381 -4.0651 10 1 1.5765 1.7045 -5.2171 11 1 -0.3506 2.4441 -3.9450 12 6 1.5432 2.1197 1.2751 13 6 2.7988 2.9433 1.6569 14 7 3.9199 2.0265 1.3276 15 6 5.1765 2.7693 1.1634 16 6 3.5338 1.3534 0.0685 17 1 -0.3634 -1.0249 0.0751 18 1 -0.3634 0.5774 0.8500 19 1 -0.3633 0.4475 -0.9252 20 1 1.8306 -0.5262 0.7813 21 1 2.7628 0.1700 -3.4845 22 1 0.7017 2.7775 1.0582 23 1 1.2891 1.4146 2.0664 24 1 2.7948 3.1796 2.7210 25 1 2.8580 3.8535 1.0600 26 1 5.0536 3.5244 0.3870 27 1 5.4374 3.2545 2.1040 28 1 5.9713 2.0803 0.8775 29 1 3.9497 1.8919 -0.7831 30 1 3.8932 0.3245 0.0721 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260786858.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:55 Heat of formation + Delta-G solvation = 14.717583 kcal Electronic energy + Delta-G solvation = -12066.955899 eV Core-core repulsion = 10090.356414 eV Total energy + Delta-G solvation = -1976.599485 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.27847 -34.37565 -31.91560 -29.86178 -27.59312 -25.47144 -24.09047 -22.84886 -20.08876 -19.01422 -16.22485 -15.08724 -14.55916 -14.36625 -13.76014 -13.16585 -13.06977 -12.29592 -12.16362 -11.77603 -11.24642 -10.96518 -10.86756 -10.62034 -10.55883 -10.46881 -10.35645 -9.78722 -9.45461 -8.97773 -8.42176 -7.51871 -6.76941 -5.87508 -3.99343 3.33026 3.38682 3.40991 4.46685 4.97911 5.32970 5.62726 5.83582 5.86630 6.01704 6.14854 6.23218 6.36176 6.49064 6.53278 6.63937 6.75355 6.87194 6.99440 7.08522 7.21718 7.54154 7.71946 7.87297 8.00019 8.27344 8.66274 8.89882 9.20729 9.67049 11.16438 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.038499 B = 0.017393 C = 0.014655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.112348 B = 1609.422572 C = 1910.187266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.652 5.652 3 C 0.244 3.756 4 C -0.528 4.528 5 H 0.052 0.948 6 C 0.086 3.914 7 N -0.843 5.843 8 Si 0.878 3.122 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.278 1.278 12 C -0.150 4.150 13 C 0.044 3.956 14 N -0.537 5.537 15 C 0.022 3.978 16 C 0.068 3.932 17 H 0.034 0.966 18 H -0.003 1.003 19 H 0.066 0.934 20 H 0.303 0.697 21 H 0.256 0.744 22 H 0.058 0.942 23 H 0.047 0.953 24 H 0.058 0.942 25 H 0.039 0.961 26 H 0.023 0.977 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.459 2.201 5.048 5.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.280 5.280 3 C 0.154 3.846 4 C -0.566 4.566 5 H 0.070 0.930 6 C -0.121 4.121 7 N -0.477 5.477 8 Si 0.705 3.295 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.204 1.204 12 C -0.190 4.190 13 C -0.085 4.085 14 N -0.262 5.262 15 C -0.128 4.128 16 C -0.059 4.059 17 H 0.052 0.948 18 H 0.015 0.985 19 H 0.085 0.915 20 H 0.119 0.881 21 H 0.066 0.934 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.705 1.584 4.616 4.931 hybrid contribution -0.663 1.353 -0.667 1.648 sum 0.042 2.937 3.949 4.922 Atomic orbital electron populations 1.21843 0.90277 0.97727 0.99931 1.60593 1.05441 1.15780 1.46189 1.19272 0.89982 0.84676 0.90672 1.20791 1.38341 1.07716 0.89794 0.93025 1.24902 0.94446 0.94485 0.98271 1.70069 1.34344 1.20592 1.22652 0.86927 0.79696 0.79590 0.83251 1.20550 1.21336 1.20368 1.23282 0.96445 0.99279 0.99967 1.23004 0.91948 0.94915 0.98584 1.64834 1.01882 1.25704 1.33767 1.22389 0.93668 0.97216 0.99487 1.22873 0.97670 0.97897 0.87474 0.94752 0.98475 0.91530 0.88090 0.93408 0.92302 0.93464 0.92382 0.94268 0.95814 0.92811 0.92168 0.92990 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.14 10.15 60.07 0.61 1.75 16 2 N -0.65 -15.51 5.64 -106.97 -0.60 -16.12 16 3 C 0.24 5.92 0.41 -131.39 -0.05 5.87 16 4 C -0.53 -14.14 6.63 -34.44 -0.23 -14.37 16 5 H 0.05 1.40 7.55 -52.48 -0.40 1.00 16 6 C 0.09 2.33 5.11 -17.82 -0.09 2.24 16 7 N -0.84 -23.69 11.96 55.43 0.66 -23.03 16 8 Si 0.88 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C -0.15 -3.19 5.01 -24.86 -0.12 -3.32 16 13 C 0.04 0.87 6.56 -1.90 -0.01 0.86 16 14 N -0.54 -11.15 5.55 -238.72 -1.33 -12.47 16 15 C 0.02 0.39 9.40 60.06 0.56 0.95 16 16 C 0.07 1.64 5.25 -2.75 -0.01 1.63 16 17 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 18 H 0.00 -0.06 6.87 -51.93 -0.36 -0.42 16 19 H 0.07 1.59 7.31 -51.93 -0.38 1.21 16 20 H 0.30 6.73 8.76 -39.29 -0.34 6.38 16 21 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 22 H 0.06 1.26 7.67 -51.93 -0.40 0.86 16 23 H 0.05 0.96 7.79 -51.93 -0.40 0.56 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.04 0.79 7.96 -51.93 -0.41 0.38 16 26 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 1.37 6.96 -51.93 -0.36 1.01 16 30 H 0.06 1.62 7.89 -51.93 -0.41 1.21 16 LS Contribution 240.18 15.07 3.62 3.62 Total: -1.00 -27.98 240.18 -6.72 -34.70 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -4.71 Total: 1.67 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 0.65 Total: -4.40 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -1.27 Total: -51.62 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -27.98 -6.72 -34.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260786858.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.418 kcal (2) G-P(sol) polarization free energy of solvation -27.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds