Wall clock time and date at job start Mon Mar 30 2020 02:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99780 * 2 1 4 4 C 1.53000 * 109.46967 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.43213 * 303.90974 * 4 3 2 6 6 C 1.54887 * 110.48663 * 66.44940 * 4 3 2 7 7 C 1.54890 * 102.91108 * 156.52843 * 6 4 3 8 8 C 1.54463 * 104.10368 * 322.30112 * 7 6 4 9 9 C 1.53877 * 106.68421 * 23.34437 * 8 7 6 10 10 H 1.08995 * 110.02951 * 240.87549 * 9 8 7 11 11 C 1.50704 * 110.03377 * 119.44132 * 9 8 7 12 12 H 1.07995 * 119.99906 * 242.83238 * 11 9 8 13 13 C 1.37879 * 119.99826 * 62.83164 * 11 9 8 14 14 N 1.31509 * 119.99810 * 0.02562 * 13 11 9 15 15 Si 1.86791 * 119.99765 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47418 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46994 * 120.00191 * 15 13 11 18 18 H 1.48499 * 109.47399 * 239.99919 * 15 13 11 19 19 H 1.08999 * 109.47361 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47449 * 300.00304 * 1 2 3 21 21 H 1.09004 * 109.47126 * 60.00272 * 1 2 3 22 22 H 1.09002 * 109.47202 * 59.99683 * 3 2 1 23 23 H 1.08997 * 109.46799 * 299.99339 * 3 2 1 24 24 H 1.09002 * 110.75856 * 274.93753 * 6 4 3 25 25 H 1.09006 * 110.75640 * 38.12739 * 6 4 3 26 26 H 1.09003 * 110.48855 * 80.83451 * 7 6 4 27 27 H 1.09003 * 110.48748 * 203.47148 * 7 6 4 28 28 H 1.08999 * 109.85715 * 264.10233 * 8 7 6 29 29 H 1.08997 * 110.12155 * 142.72920 * 8 7 6 30 30 H 0.97001 * 119.99754 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8695 0.5868 0.8486 6 6 4.0306 0.5638 -1.3291 7 6 5.4932 1.0652 -1.4217 8 6 5.4326 2.5065 -0.8695 9 6 4.1877 2.5824 0.0317 10 1 3.4922 3.3276 -0.3544 11 6 4.5910 2.9327 1.4408 12 1 4.4058 2.2356 2.2446 13 6 5.1964 4.1432 1.7038 14 7 5.4214 4.9923 0.7251 15 14 5.6957 4.5777 3.4506 16 1 5.3347 3.4613 4.3609 17 1 7.1622 4.8051 3.5042 18 1 4.9876 5.8120 3.8753 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.6885 1.8465 0.8900 23 1 1.6886 1.8463 -0.8900 24 1 3.9976 -0.5248 -1.2831 25 1 3.4423 0.9314 -2.1699 26 1 6.1475 0.4491 -0.8050 27 1 5.8319 1.0643 -2.4578 28 1 5.3413 3.2149 -1.6929 29 1 6.3285 2.7231 -0.2877 30 1 5.8470 5.8440 0.9102 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260853696.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:10 Heat of formation + Delta-G solvation = -72.366316 kcal Electronic energy + Delta-G solvation = -11547.853890 eV Core-core repulsion = 9535.185412 eV Total energy + Delta-G solvation = -2012.668478 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.02632 -36.34208 -32.42826 -29.65310 -27.99485 -26.12201 -24.37145 -22.82580 -19.53827 -18.62661 -16.47358 -15.49988 -15.24510 -14.89755 -14.54050 -13.74395 -13.24325 -12.52693 -12.26421 -11.71865 -11.39006 -11.08182 -10.99757 -10.47445 -10.44354 -9.93831 -9.85429 -9.72397 -9.55325 -9.18417 -9.01828 -8.64662 -8.33747 -5.97613 -4.00168 3.31363 3.39618 3.43957 4.30701 4.47831 5.34516 5.53008 5.57363 5.67312 5.77339 5.81282 5.86293 6.05753 6.21186 6.43407 6.55937 6.67039 6.76366 6.89665 6.98540 7.04304 7.38096 7.41138 7.72032 7.77961 7.95498 8.02341 8.51816 9.03419 9.63507 11.11836 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.040100 B = 0.012617 C = 0.010411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.087156 B = 2218.719296 C = 2688.721953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.396 6.396 3 C 0.073 3.927 4 C -0.083 4.083 5 H 0.071 0.929 6 C -0.112 4.112 7 C -0.129 4.129 8 C -0.091 4.091 9 C 0.053 3.947 10 H 0.027 0.973 11 C -0.511 4.511 12 H 0.056 0.944 13 C 0.060 3.940 14 N -0.890 5.890 15 Si 0.887 3.113 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 H 0.077 0.923 20 H 0.036 0.964 21 H 0.034 0.966 22 H 0.050 0.950 23 H 0.040 0.960 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.036 0.964 29 H 0.062 0.938 30 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.130 -6.162 -2.398 8.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.315 6.315 3 C -0.003 4.003 4 C -0.102 4.102 5 H 0.090 0.910 6 C -0.150 4.150 7 C -0.167 4.167 8 C -0.130 4.130 9 C 0.035 3.965 10 H 0.045 0.955 11 C -0.549 4.549 12 H 0.074 0.926 13 C -0.142 4.142 14 N -0.528 5.528 15 Si 0.715 3.285 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 H 0.095 0.905 20 H 0.055 0.945 21 H 0.053 0.947 22 H 0.068 0.932 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.938 -6.139 -2.428 8.244 hybrid contribution 0.078 0.662 0.939 1.151 sum -4.861 -5.477 -1.489 7.472 Atomic orbital electron populations 1.22636 0.82551 1.01704 0.99548 1.87876 1.18447 1.29811 1.95370 1.22720 0.95008 0.82912 0.99614 1.22174 0.90828 1.00202 0.96959 0.91012 1.22446 0.96310 0.98710 0.97513 1.22491 0.96052 0.99256 0.98868 1.22075 1.01183 0.91895 0.97799 1.19236 0.92508 0.89360 0.95418 0.95456 1.21316 1.38783 1.01684 0.93112 0.92598 1.24983 0.95990 0.96454 0.96723 1.69996 1.43126 1.08704 1.31000 0.86609 0.78201 0.78306 0.85344 1.19781 1.21101 1.21147 0.90482 0.94520 0.94694 0.93175 0.94126 0.93088 0.92857 0.92845 0.93719 0.94472 0.91923 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.40 -7.21 10.54 -35.23 -0.37 -7.59 16 3 C 0.07 1.43 5.21 37.16 0.19 1.63 16 4 C -0.08 -1.79 2.67 -88.96 -0.24 -2.03 16 5 H 0.07 1.63 7.68 -51.93 -0.40 1.23 16 6 C -0.11 -2.17 6.17 -24.74 -0.15 -2.32 16 7 C -0.13 -2.57 6.85 -24.97 -0.17 -2.74 16 8 C -0.09 -2.19 5.61 -25.51 -0.14 -2.33 16 9 C 0.05 1.34 2.39 -90.65 -0.22 1.12 16 10 H 0.03 0.74 7.84 -51.93 -0.41 0.33 16 11 C -0.51 -14.08 8.32 -34.44 -0.29 -14.36 16 12 H 0.06 1.54 7.54 -52.49 -0.40 1.14 16 13 C 0.06 1.67 5.09 -17.82 -0.09 1.58 16 14 N -0.89 -25.73 12.45 55.43 0.69 -25.04 16 15 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 19 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 20 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.99 8.02 -51.93 -0.42 0.57 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 1.64 7.26 -51.93 -0.38 1.27 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 247.05 15.07 3.72 3.72 Total: -1.00 -28.79 247.05 -5.90 -34.70 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: -4.93 Total: -4.31 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 0.01 Total: -17.91 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.69 Total: -25.04 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.37 Total: -7.59 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.79 -5.90 -34.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260853696.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.670 kcal (2) G-P(sol) polarization free energy of solvation -28.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds