Wall clock time and date at job start Mon Mar 30 2020 02:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99780 * 2 1 4 4 C 1.53000 * 109.46967 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.43213 * 303.90974 * 4 3 2 6 6 C 1.54887 * 110.48663 * 66.44940 * 4 3 2 7 7 C 1.54890 * 102.91108 * 156.52843 * 6 4 3 8 8 C 1.54463 * 104.10368 * 322.30112 * 7 6 4 9 9 C 1.53877 * 106.68421 * 23.34437 * 8 7 6 10 10 H 1.08995 * 110.02951 * 240.87549 * 9 8 7 11 11 C 1.50704 * 110.03377 * 119.44132 * 9 8 7 12 12 H 1.07995 * 119.99906 * 242.83238 * 11 9 8 13 13 C 1.37879 * 119.99826 * 62.83164 * 11 9 8 14 14 N 1.31509 * 119.99810 * 0.02562 * 13 11 9 15 15 Si 1.86791 * 119.99765 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47418 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46994 * 120.00191 * 15 13 11 18 18 H 1.48499 * 109.47399 * 239.99919 * 15 13 11 19 19 H 1.08999 * 109.47361 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47449 * 300.00304 * 1 2 3 21 21 H 1.09004 * 109.47126 * 60.00272 * 1 2 3 22 22 H 1.09002 * 109.47202 * 59.99683 * 3 2 1 23 23 H 1.08997 * 109.46799 * 299.99339 * 3 2 1 24 24 H 1.09002 * 110.75856 * 274.93753 * 6 4 3 25 25 H 1.09006 * 110.75640 * 38.12739 * 6 4 3 26 26 H 1.09003 * 110.48855 * 80.83451 * 7 6 4 27 27 H 1.09003 * 110.48748 * 203.47148 * 7 6 4 28 28 H 1.08999 * 109.85715 * 264.10233 * 8 7 6 29 29 H 1.08997 * 110.12155 * 142.72920 * 8 7 6 30 30 H 0.97001 * 119.99754 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8695 0.5868 0.8486 6 6 4.0306 0.5638 -1.3291 7 6 5.4932 1.0652 -1.4217 8 6 5.4326 2.5065 -0.8695 9 6 4.1877 2.5824 0.0317 10 1 3.4922 3.3276 -0.3544 11 6 4.5910 2.9327 1.4408 12 1 4.4058 2.2356 2.2446 13 6 5.1964 4.1432 1.7038 14 7 5.4214 4.9923 0.7251 15 14 5.6957 4.5777 3.4506 16 1 5.3347 3.4613 4.3609 17 1 7.1622 4.8051 3.5042 18 1 4.9876 5.8120 3.8753 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.6885 1.8465 0.8900 23 1 1.6886 1.8463 -0.8900 24 1 3.9976 -0.5248 -1.2831 25 1 3.4423 0.9314 -2.1699 26 1 6.1475 0.4491 -0.8050 27 1 5.8319 1.0643 -2.4578 28 1 5.3413 3.2149 -1.6929 29 1 6.3285 2.7231 -0.2877 30 1 5.8470 5.8440 0.9102 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260853696.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:10 Heat of formation + Delta-G solvation = -89.581803 kcal Electronic energy + Delta-G solvation = -11548.600409 eV Core-core repulsion = 9535.185412 eV Total energy + Delta-G solvation = -2013.414997 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.63629 -37.89528 -34.50718 -31.26849 -29.90926 -27.38723 -26.25235 -24.54189 -21.24722 -20.47328 -18.42867 -17.11003 -16.63403 -16.55461 -16.30877 -15.46126 -14.77929 -14.19914 -13.98052 -13.56447 -12.96912 -12.95092 -12.55926 -12.30385 -12.21836 -11.68031 -11.51007 -11.44581 -11.31330 -10.98928 -10.70862 -10.49715 -10.45782 -8.11747 -6.20772 1.38945 1.41159 1.52468 2.43419 2.96201 3.19702 4.03114 4.07976 4.16018 4.45296 4.50203 4.59092 4.67691 4.80390 4.85293 4.93850 5.00283 5.03345 5.16224 5.24922 5.35082 5.50002 5.66821 5.69061 5.94321 5.97528 6.32950 6.42920 6.90542 7.46233 8.97475 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.040100 B = 0.012617 C = 0.010411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.087156 B = 2218.719296 C = 2688.721953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.083 3.917 4 C -0.081 4.081 5 H 0.057 0.943 6 C -0.102 4.102 7 C -0.120 4.120 8 C -0.087 4.087 9 C 0.047 3.953 10 H 0.000 1.000 11 C -0.527 4.527 12 H 0.050 0.950 13 C 0.011 3.989 14 N -0.919 5.919 15 Si 0.950 3.050 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.280 1.280 19 H 0.103 0.897 20 H 0.041 0.959 21 H 0.048 0.952 22 H 0.037 0.963 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.025 0.975 29 H 0.031 0.969 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.641 -7.335 -2.467 9.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.330 6.330 3 C 0.007 3.993 4 C -0.100 4.100 5 H 0.075 0.925 6 C -0.140 4.140 7 C -0.158 4.158 8 C -0.126 4.126 9 C 0.029 3.971 10 H 0.018 0.982 11 C -0.565 4.565 12 H 0.068 0.932 13 C -0.188 4.188 14 N -0.559 5.559 15 Si 0.776 3.224 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.206 1.206 19 H 0.122 0.878 20 H 0.060 0.940 21 H 0.066 0.934 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.462 -7.326 -2.497 9.473 hybrid contribution 0.180 1.020 0.955 1.409 sum -5.282 -6.306 -1.542 8.369 Atomic orbital electron populations 1.22928 0.80034 1.03799 1.00468 1.87826 1.21132 1.28540 1.95493 1.22446 0.93775 0.83761 0.99360 1.22012 0.92317 0.97740 0.97927 0.92472 1.22390 0.95545 0.99727 0.96292 1.22428 0.96953 0.96125 1.00259 1.21919 0.99169 0.94630 0.96844 1.19214 0.92721 0.90845 0.94364 0.98229 1.21626 1.38779 1.01829 0.94263 0.93193 1.25734 0.96046 0.96444 1.00546 1.70107 1.43815 1.09036 1.32899 0.85618 0.77870 0.78110 0.80771 1.19209 1.20657 1.20622 0.87846 0.94004 0.93378 0.94516 0.93384 0.91070 0.91765 0.92323 0.91057 0.95629 0.95039 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 11.01 113.37 1.25 1.84 16 2 O -0.41 -14.12 10.54 -148.98 -1.57 -15.69 16 3 C 0.08 3.17 5.21 71.98 0.38 3.54 16 4 C -0.08 -3.47 2.67 -9.72 -0.03 -3.49 16 5 H 0.06 2.58 7.68 -2.38 -0.02 2.56 16 6 C -0.10 -3.72 6.17 31.88 0.20 -3.52 16 7 C -0.12 -4.58 6.85 31.74 0.22 -4.36 16 8 C -0.09 -4.22 5.61 31.39 0.18 -4.05 16 9 C 0.05 2.40 2.39 -10.81 -0.03 2.38 16 10 H 0.00 -0.03 7.84 -2.39 -0.02 -0.04 16 11 C -0.53 -29.56 8.32 25.60 0.21 -29.34 16 12 H 0.05 2.79 7.54 -2.91 -0.02 2.77 16 13 C 0.01 0.61 5.09 84.66 0.43 1.04 16 14 N -0.92 -54.16 12.45 21.45 0.27 -53.90 16 15 Si 0.95 44.35 29.54 68.60 2.03 46.38 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 20 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 21 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 24 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.06 2.20 8.02 -2.38 -0.02 2.18 16 26 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.03 1.67 7.26 -2.39 -0.02 1.66 16 30 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -61.36 247.05 4.61 -56.75 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: 1.08 Total: 2.42 kcal Atomic # 6 Polarization: -38.77 SS G_CDS: 2.81 Total: -35.97 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.27 Total: -53.90 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -1.57 Total: -15.69 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -61.36 4.61 -56.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260853696.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.830 kcal (2) G-P(sol) polarization free energy of solvation -61.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds