Wall clock time and date at job start Mon Mar 30 2020 02:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42907 * 109.46869 * 2 1 4 4 C 1.42905 * 113.99648 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47416 * 30.00430 * 4 3 2 6 6 C 1.50700 * 109.47095 * 269.99847 * 4 3 2 7 7 H 1.08000 * 119.99898 * 119.99828 * 6 4 3 8 8 C 1.37879 * 120.00465 * 300.00450 * 6 4 3 9 9 N 1.31519 * 119.99431 * 0.02562 * 8 6 4 10 10 Si 1.86794 * 120.00216 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47104 * 60.00232 * 10 8 6 12 12 H 1.48505 * 109.47101 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47491 * 300.00035 * 10 8 6 14 14 C 1.53000 * 109.46848 * 150.00501 * 4 3 2 15 15 C 1.52997 * 109.47060 * 294.99674 * 14 4 3 16 16 C 1.52998 * 117.50310 * 243.74949 * 15 14 4 17 17 C 1.52996 * 117.50163 * 175.08923 * 15 14 4 18 18 H 1.08997 * 109.47326 * 59.99501 * 1 2 3 19 19 H 1.09000 * 109.47320 * 179.97438 * 1 2 3 20 20 H 1.09008 * 109.47104 * 299.99754 * 1 2 3 21 21 H 1.08999 * 109.47507 * 240.00646 * 2 1 3 22 22 H 1.08998 * 109.47536 * 119.99745 * 2 1 3 23 23 H 0.97000 * 119.99275 * 180.02562 * 9 8 6 24 24 H 1.09002 * 109.47398 * 54.99843 * 14 4 3 25 25 H 1.09001 * 109.47194 * 175.00023 * 14 4 3 26 26 H 1.09008 * 115.55245 * 29.41643 * 15 14 4 27 27 H 1.09000 * 117.49561 * 359.97438 * 16 15 14 28 28 H 1.09000 * 117.50593 * 145.01245 * 16 15 14 29 29 H 1.09004 * 117.49898 * 214.97822 * 17 15 14 30 30 H 1.09005 * 117.49813 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6019 -0.5147 6 6 3.9322 1.4997 1.4200 7 1 4.6152 0.7411 1.7729 8 6 3.5188 2.5040 2.2694 9 7 2.6866 3.4274 1.8399 10 14 4.1398 2.5525 4.0305 11 1 5.6201 2.6695 4.0303 12 1 3.5514 3.7224 4.7308 13 1 3.7419 1.3046 4.7302 14 6 3.8402 2.7460 -0.7217 15 6 3.4410 2.6532 -2.1958 16 6 4.5645 2.6667 -3.2343 17 6 3.6618 3.8915 -3.0668 18 1 -0.3634 0.5139 -0.8899 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5138 0.8901 21 1 1.8933 -0.5137 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 2.3961 4.1342 2.4373 24 1 3.3371 3.5965 -0.2618 25 1 4.9196 2.8775 -0.6453 26 1 2.5667 2.0378 -2.4083 27 1 5.5881 2.7420 -2.8673 28 1 4.4293 2.0605 -4.1300 29 1 2.9330 4.0906 -3.8525 30 1 4.0912 4.7724 -2.5896 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260858922.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:29 Heat of formation + Delta-G solvation = -52.322169 kcal Electronic energy + Delta-G solvation = -11569.512658 eV Core-core repulsion = 9557.713360 eV Total energy + Delta-G solvation = -2011.799298 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.08719 -37.55573 -34.83929 -32.27249 -30.26770 -27.43415 -23.43098 -23.26163 -22.97512 -20.99156 -18.60706 -17.14522 -16.58355 -16.31344 -15.89376 -15.04777 -14.51530 -14.37737 -13.58356 -13.10223 -12.95245 -12.86166 -12.58740 -12.44118 -12.26485 -12.10186 -12.03919 -11.43728 -11.27426 -10.93881 -10.52848 -10.43800 -9.69962 -8.01782 -6.28261 1.40542 1.41084 1.49024 2.42641 3.06207 3.13027 3.61577 4.02014 4.19404 4.29517 4.32297 4.55416 4.65879 4.71454 4.81146 4.84500 4.93679 5.05987 5.19746 5.22440 5.33799 5.36149 5.55192 5.57768 5.68372 6.00907 6.27953 6.67904 7.17877 7.52285 8.96920 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.029677 B = 0.015572 C = 0.011472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.272011 B = 1797.689926 C = 2440.244240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.055 3.945 3 O -0.391 6.391 4 C 0.216 3.784 5 H 0.001 0.999 6 C -0.586 4.586 7 H 0.045 0.955 8 C 0.042 3.958 9 N -0.880 5.880 10 Si 0.946 3.054 11 H -0.269 1.269 12 H -0.280 1.280 13 H -0.275 1.275 14 C -0.067 4.067 15 C -0.159 4.159 16 C -0.174 4.174 17 C -0.178 4.178 18 H 0.058 0.942 19 H 0.089 0.911 20 H 0.042 0.958 21 H 0.037 0.963 22 H 0.020 0.980 23 H 0.259 0.741 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.319 -2.387 -6.020 6.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.022 4.022 3 O -0.311 6.311 4 C 0.160 3.840 5 H 0.019 0.981 6 C -0.624 4.624 7 H 0.063 0.937 8 C -0.162 4.162 9 N -0.516 5.516 10 Si 0.771 3.229 11 H -0.194 1.194 12 H -0.206 1.206 13 H -0.200 1.200 14 C -0.104 4.104 15 C -0.177 4.177 16 C -0.211 4.211 17 C -0.215 4.215 18 H 0.077 0.923 19 H 0.108 0.892 20 H 0.062 0.938 21 H 0.055 0.945 22 H 0.038 0.962 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.541 -2.055 -5.979 6.345 hybrid contribution 0.479 -0.169 1.172 1.277 sum -0.062 -2.224 -4.807 5.297 Atomic orbital electron populations 1.21650 0.93255 1.02485 1.01805 1.22312 0.95922 0.86020 0.97993 1.87992 1.24046 1.24265 1.94837 1.19564 0.78649 0.92784 0.93015 0.98074 1.21817 1.29566 1.12004 0.99022 0.93693 1.25650 0.94094 0.94648 1.01807 1.70113 1.31659 1.13490 1.36361 0.85829 0.78893 0.77582 0.80550 1.19435 1.20567 1.20028 1.21026 0.97956 1.00323 0.91137 1.22351 1.00275 1.02208 0.92910 1.23089 0.95566 1.01585 1.00827 1.22965 1.03493 0.92293 1.02785 0.92269 0.89247 0.93844 0.94524 0.96165 0.93136 0.91275 0.93962 0.89370 0.89156 0.87496 0.87711 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 10.28 71.98 0.74 -3.95 16 2 C 0.05 2.36 6.46 71.98 0.46 2.82 16 3 O -0.39 -20.60 8.89 -148.98 -1.32 -21.93 16 4 C 0.22 11.44 2.26 29.85 0.07 11.51 16 5 H 0.00 0.07 7.79 -2.39 -0.02 0.05 16 6 C -0.59 -33.63 8.90 25.60 0.23 -33.40 16 7 H 0.04 2.55 7.81 -2.91 -0.02 2.53 16 8 C 0.04 2.35 5.24 84.65 0.44 2.79 16 9 N -0.88 -51.56 10.93 21.45 0.23 -51.32 16 10 Si 0.95 44.11 29.54 68.60 2.03 46.14 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 14 C -0.07 -3.28 4.90 30.59 0.15 -3.13 16 15 C -0.16 -6.37 5.62 -10.80 -0.06 -6.44 16 16 C -0.17 -5.51 10.18 30.62 0.31 -5.20 16 17 C -0.18 -5.86 10.25 30.62 0.31 -5.55 16 18 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 19 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 20 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 21 H 0.04 1.43 8.08 -2.39 -0.02 1.41 16 22 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 24 H 0.07 3.85 6.22 -2.39 -0.01 3.84 16 25 H 0.04 2.05 7.88 -2.39 -0.02 2.03 16 26 H 0.09 3.65 7.75 -2.38 -0.02 3.63 16 27 H 0.09 2.82 8.03 -2.39 -0.02 2.80 16 28 H 0.11 2.84 8.14 -2.39 -0.02 2.83 16 29 H 0.10 2.96 8.14 -2.38 -0.02 2.94 16 30 H 0.09 2.86 8.14 -2.38 -0.02 2.84 16 Total: -1.00 -62.27 253.64 4.68 -57.59 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 1.08 Total: 10.07 kcal Atomic # 6 Polarization: -43.21 SS G_CDS: 2.66 Total: -40.55 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.23 Total: -51.32 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -1.32 Total: -21.93 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -62.27 4.68 -57.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260858922.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.266 kcal (2) G-P(sol) polarization free energy of solvation -62.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds