Wall clock time and date at job start Mon Mar 30 2020 01:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.46909 * 2 1 4 4 H 1.07999 * 119.99774 * 119.87199 * 3 2 1 5 5 C 1.37879 * 120.00228 * 299.87706 * 3 2 1 6 6 N 1.31515 * 119.99921 * 1.42489 * 5 3 2 7 7 Si 1.86798 * 119.99930 * 181.42929 * 5 3 2 8 8 H 1.48499 * 109.47264 * 269.99816 * 7 5 3 9 9 H 1.48502 * 109.47249 * 29.99883 * 7 5 3 10 10 H 1.48509 * 109.46897 * 149.99632 * 7 5 3 11 11 C 1.53004 * 109.46848 * 240.00249 * 2 1 3 12 12 O 1.42898 * 109.46658 * 174.63943 * 11 2 1 13 13 C 1.52998 * 109.47209 * 120.00111 * 2 1 3 14 14 C 1.53780 * 113.61453 * 42.45874 * 13 2 1 15 15 C 1.53774 * 87.08179 * 220.01787 * 14 13 2 16 16 C 1.53774 * 113.61491 * 304.95961 * 13 2 1 17 17 H 1.08998 * 109.47607 * 52.59206 * 1 2 3 18 18 H 1.09010 * 109.46793 * 172.58656 * 1 2 3 19 19 H 1.08996 * 109.47209 * 292.58371 * 1 2 3 20 20 H 0.96997 * 120.00046 * 354.56616 * 6 5 3 21 21 H 1.08995 * 109.47264 * 294.64112 * 11 2 1 22 22 H 1.09007 * 109.47307 * 54.64580 * 11 2 1 23 23 H 0.96705 * 114.00165 * 179.97438 * 12 11 2 24 24 H 1.09005 * 112.84632 * 173.75617 * 13 2 1 25 25 H 1.09004 * 113.61268 * 334.56486 * 14 13 2 26 26 H 1.09001 * 113.62107 * 105.46724 * 14 13 2 27 27 H 1.09002 * 113.61154 * 270.88340 * 15 14 13 28 28 H 1.08993 * 113.62150 * 139.98049 * 15 14 13 29 29 H 1.09004 * 113.61170 * 254.52871 * 16 13 2 30 30 H 1.08996 * 113.61880 * 25.43135 * 16 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 1 2.6515 1.7746 0.8111 5 6 1.7013 2.2691 -1.0353 6 7 0.9243 1.8467 -2.0087 7 14 2.3567 4.0182 -1.0556 8 1 1.4044 4.9119 -0.3486 9 1 3.6750 4.0608 -0.3734 10 1 2.5117 4.4725 -2.4610 11 6 2.0400 -0.7212 -1.2493 12 8 3.4634 -0.6132 -1.3139 13 6 2.0401 -0.7213 1.2492 14 6 1.2653 -2.0087 1.5767 15 6 1.3632 -1.5979 3.0553 16 6 1.4842 -0.1462 2.5626 17 1 -0.3634 0.6243 -0.8163 18 1 -0.3633 -1.0192 -0.1326 19 1 -0.3633 0.3946 0.9488 20 1 0.6482 0.9173 -2.0403 21 1 1.7571 -1.7728 -1.2027 22 1 1.6004 -0.2657 -2.1368 23 1 3.8565 -1.0491 -2.0825 24 1 3.1226 -0.8489 1.2519 25 1 0.2456 -2.0144 1.1917 26 1 1.8135 -2.9205 1.3396 27 1 2.2605 -1.9666 3.5523 28 1 0.4536 -1.7918 3.6235 29 1 2.2093 0.4456 3.1215 30 1 0.5244 0.3572 2.4473 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260878066.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:10 Heat of formation + Delta-G solvation = -28.073386 kcal Electronic energy + Delta-G solvation = -12105.323591 eV Core-core repulsion = 10094.575799 eV Total energy + Delta-G solvation = -2010.747792 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.91196 -35.80293 -33.63171 -30.06865 -25.72672 -25.21194 -24.22097 -23.79918 -19.74864 -17.84836 -16.83541 -16.18730 -14.82601 -14.42614 -13.68098 -13.38007 -12.84136 -12.31859 -12.01177 -11.59645 -11.19651 -10.85721 -10.74124 -10.52992 -10.30975 -10.26977 -9.98663 -9.60827 -9.43349 -9.05505 -8.74592 -8.15518 -8.09030 -6.06608 -3.87809 3.50159 3.55424 3.70249 4.63575 5.35122 5.43871 5.48151 5.50389 5.51969 5.82555 6.12741 6.30922 6.37415 6.42990 6.43464 6.49732 6.68187 6.69300 6.85237 6.92098 6.98520 7.17679 7.25863 7.52042 7.75593 8.37721 8.58371 8.76194 9.03832 9.78778 11.17306 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.044952 B = 0.015912 C = 0.014346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.737805 B = 1759.285279 C = 1951.256911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 C -0.551 4.551 4 H 0.047 0.953 5 C 0.020 3.980 6 N -0.930 5.930 7 Si 1.066 2.934 8 H -0.291 1.291 9 H -0.291 1.291 10 H -0.288 1.288 11 C 0.080 3.920 12 O -0.554 6.554 13 C -0.076 4.076 14 C -0.149 4.149 15 C -0.147 4.147 16 C -0.126 4.126 17 H 0.071 0.929 18 H 0.020 0.980 19 H 0.045 0.955 20 H 0.274 0.726 21 H 0.004 0.996 22 H 0.052 0.948 23 H 0.349 0.651 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.522 -5.350 4.114 6.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.063 3.937 3 C -0.590 4.590 4 H 0.065 0.935 5 C -0.182 4.182 6 N -0.573 5.573 7 Si 0.896 3.104 8 H -0.218 1.218 9 H -0.217 1.217 10 H -0.214 1.214 11 C 0.002 3.998 12 O -0.355 6.355 13 C -0.094 4.094 14 C -0.187 4.187 15 C -0.184 4.184 16 C -0.163 4.163 17 H 0.089 0.911 18 H 0.038 0.962 19 H 0.064 0.936 20 H 0.091 0.909 21 H 0.022 0.978 22 H 0.069 0.931 23 H 0.191 0.809 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.352 -3.575 3.857 5.271 hybrid contribution 0.192 -1.818 0.293 1.851 sum 0.544 -5.393 4.150 6.826 Atomic orbital electron populations 1.22117 0.98211 0.98181 1.02175 1.18203 0.91254 0.95272 0.88979 1.21706 1.33323 0.95227 1.08736 0.93463 1.25587 0.94805 1.04958 0.92829 1.70875 1.33397 1.19056 1.33958 0.83594 0.75788 0.75216 0.75820 1.21827 1.21688 1.21351 1.22541 0.80525 0.95093 1.01673 1.86636 1.21360 1.79557 1.47974 1.22333 0.98478 0.93324 0.95254 1.23133 1.01281 0.98305 0.95946 1.22837 1.00369 0.98690 0.96501 1.22863 1.01474 0.94539 0.97464 0.91067 0.96159 0.93617 0.90924 0.97834 0.93055 0.80853 0.90509 0.90147 0.93188 0.91335 0.92718 0.92843 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 7.19 37.16 0.27 -3.21 16 2 C 0.06 1.55 0.24 -155.66 -0.04 1.51 16 3 C -0.55 -15.41 7.16 -34.44 -0.25 -15.65 16 4 H 0.05 1.36 7.70 -52.49 -0.40 0.96 16 5 C 0.02 0.56 5.13 -17.82 -0.09 0.47 16 6 N -0.93 -27.38 12.32 55.43 0.68 -26.70 16 7 Si 1.07 25.90 29.90 -169.99 -5.08 20.82 16 8 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 C 0.08 1.90 5.57 37.16 0.21 2.10 16 12 O -0.55 -12.94 12.70 -35.23 -0.45 -13.39 16 13 C -0.08 -1.64 2.86 -89.81 -0.26 -1.89 16 14 C -0.15 -2.73 7.15 -25.92 -0.19 -2.92 16 15 C -0.15 -2.44 8.08 -25.92 -0.21 -2.65 16 16 C -0.13 -2.48 7.03 -25.92 -0.18 -2.66 16 17 H 0.07 1.83 5.23 -51.93 -0.27 1.56 16 18 H 0.02 0.41 6.50 -51.92 -0.34 0.07 16 19 H 0.04 1.03 5.96 -51.93 -0.31 0.72 16 20 H 0.27 7.82 3.34 -40.82 -0.14 7.68 16 21 H 0.00 0.08 7.94 -51.93 -0.41 -0.34 16 22 H 0.05 1.32 5.31 -51.93 -0.28 1.04 16 23 H 0.35 6.27 9.12 45.56 0.42 6.69 16 24 H 0.08 1.77 7.87 -51.93 -0.41 1.37 16 25 H 0.08 1.47 5.75 -51.93 -0.30 1.17 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.08 1.66 6.01 -51.93 -0.31 1.35 16 LS Contribution 229.96 15.07 3.47 3.47 Total: -1.00 -30.49 229.96 -5.36 -35.85 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -3.24 Total: 4.85 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: -0.74 Total: -24.89 kcal Atomic # 7 Polarization: -27.38 SS G_CDS: 0.68 Total: -26.70 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.45 Total: -13.39 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.08 Total: 20.82 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -30.49 -5.36 -35.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260878066.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.774 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds