Wall clock time and date at job start Mon Mar 30 2020 02:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.52291 * 305.00406 * 10 9 7 12 12 C 1.53122 * 109.52384 * 65.12585 * 10 9 7 13 13 C 1.53033 * 109.28252 * 177.56281 * 12 10 9 14 14 N 1.46851 * 109.52190 * 300.82060 * 13 12 10 15 15 C 1.46850 * 111.19568 * 61.74073 * 14 13 12 16 16 C 1.53048 * 109.57578 * 298.28799 * 15 14 13 17 17 H 1.09001 * 109.45216 * 299.18132 * 16 15 14 18 18 N 1.46896 * 109.55588 * 179.05882 * 16 15 14 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.09003 * 109.49993 * 297.50298 * 12 10 9 23 23 H 1.08992 * 109.50165 * 57.61475 * 12 10 9 24 24 H 1.09000 * 109.46137 * 60.83084 * 13 12 10 25 25 H 1.08994 * 109.46650 * 180.81271 * 13 12 10 26 26 H 1.00900 * 110.99713 * 297.64438 * 14 13 12 27 27 H 1.08994 * 109.46732 * 58.28050 * 15 14 13 28 28 H 1.09008 * 109.45815 * 178.25642 * 15 14 13 29 29 H 1.00902 * 111.00190 * 60.16953 * 18 16 15 30 30 H 1.00898 * 111.00007 * 184.12694 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9298 -3.5561 -0.8410 12 6 3.0390 -3.6567 1.3098 13 6 3.9883 -4.8568 1.3302 14 7 3.2126 -6.0981 1.2125 15 6 2.4789 -6.1472 -0.0586 16 6 1.4846 -4.9854 -0.1220 17 1 0.7716 -5.0727 0.6978 18 7 0.7669 -5.0218 -1.4032 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 3.6163 -2.7348 1.3815 23 1 2.3512 -3.7223 2.1527 24 1 4.6847 -4.7832 0.4949 25 1 4.5447 -4.8639 2.2674 26 1 2.5865 -6.2089 1.9959 27 1 3.1824 -6.0677 -0.8874 28 1 1.9389 -7.0914 -0.1300 29 1 0.2570 -5.8862 -1.5076 30 1 0.1533 -4.2264 -1.4966 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260887227.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:09 Heat of formation + Delta-G solvation = -20.577776 kcal Electronic energy + Delta-G solvation = -11629.789032 eV Core-core repulsion = 9651.659025 eV Total energy + Delta-G solvation = -1978.130007 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.70777 -33.96853 -33.05850 -31.36867 -28.21607 -26.67873 -23.82406 -21.63040 -21.07783 -19.20169 -16.46290 -15.49731 -15.03809 -14.69853 -14.47927 -13.95154 -13.66813 -12.41947 -12.14685 -12.03581 -11.84814 -11.45766 -11.02851 -10.94747 -10.63515 -10.51610 -10.06832 -9.70851 -9.40806 -9.01754 -8.37228 -8.21968 -7.94362 -6.01742 -4.02802 3.29615 3.37389 3.41393 4.44760 4.57920 5.04103 5.29401 5.35948 5.53325 5.57743 5.78367 5.84844 5.95439 6.10717 6.30762 6.40204 6.55563 6.83243 6.97574 7.09738 7.24397 7.57554 7.62818 7.70233 7.79218 7.93951 7.98213 8.42079 9.03211 9.60924 11.09700 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.055274 B = 0.011329 C = 0.009905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.441702 B = 2470.893581 C = 2826.305580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.074 4.074 11 H 0.064 0.936 12 C -0.140 4.140 13 C 0.052 3.948 14 N -0.686 5.686 15 C 0.065 3.935 16 C 0.060 3.940 17 H 0.024 0.976 18 N -0.844 5.844 19 H 0.259 0.741 20 H 0.009 0.991 21 H 0.019 0.981 22 H 0.076 0.924 23 H 0.052 0.948 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.334 0.666 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.327 0.673 30 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.285 -8.928 1.558 9.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.093 4.093 11 H 0.083 0.917 12 C -0.180 4.180 13 C -0.078 4.078 14 N -0.314 5.314 15 C -0.066 4.066 16 C -0.053 4.053 17 H 0.042 0.958 18 N -0.375 5.375 19 H 0.069 0.931 20 H 0.027 0.973 21 H 0.037 0.963 22 H 0.095 0.905 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.151 0.849 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.414 -9.133 0.987 10.191 hybrid contribution -1.308 1.684 0.761 2.264 sum 3.105 -7.449 1.748 8.257 Atomic orbital electron populations 1.69966 1.06045 1.26414 1.51233 1.25021 0.94831 0.99228 0.95449 0.86567 0.80171 0.83935 0.77534 1.19731 1.21040 1.21112 1.21252 0.92999 0.90856 1.49941 0.92586 1.19133 0.93711 0.91435 0.96655 1.21254 0.97968 0.93660 0.96445 0.91706 1.22212 0.98595 0.98986 0.98170 1.22116 0.96178 0.87899 1.01558 1.60838 1.29366 1.36758 1.04407 1.22009 0.95572 0.96484 0.92496 1.22183 0.95447 0.97733 0.89946 0.95812 1.58742 1.36444 1.07368 1.34962 0.93138 0.97257 0.96294 0.90491 0.92934 0.91259 0.91488 0.84931 0.90528 0.91947 0.86195 0.83379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.51 -14.33 8.44 -34.44 -0.29 -14.62 16 8 H 0.06 1.54 7.07 -52.49 -0.37 1.17 16 9 C 0.03 0.71 4.29 -27.88 -0.12 0.59 16 10 C -0.07 -1.53 1.90 -90.50 -0.17 -1.71 16 11 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 12 C -0.14 -2.60 5.13 -26.65 -0.14 -2.74 16 13 C 0.05 0.80 6.55 -3.83 -0.03 0.77 16 14 N -0.69 -10.06 6.87 -113.81 -0.78 -10.84 16 15 C 0.06 0.98 6.13 -3.83 -0.02 0.96 16 16 C 0.06 1.05 2.89 -67.63 -0.20 0.85 16 17 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 18 N -0.84 -14.15 9.24 -4.60 -0.04 -14.19 16 19 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 20 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 21 H 0.02 0.51 6.41 -51.93 -0.33 0.18 16 22 H 0.08 1.54 7.04 -51.93 -0.37 1.18 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.33 4.54 8.86 -39.29 -0.35 4.19 16 27 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 29 H 0.33 4.51 9.04 -39.29 -0.36 4.16 16 30 H 0.35 6.42 7.05 -39.29 -0.28 6.14 16 LS Contribution 239.96 15.07 3.62 3.62 Total: -1.00 -29.38 239.96 -7.12 -36.50 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -4.57 Total: 8.71 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -1.06 Total: -14.40 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: -0.09 Total: -51.13 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.38 -7.12 -36.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260887227.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.920 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds