Wall clock time and date at job start Mon Mar 30 2020 02:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00041 * 2 1 4 4 H 1.48497 * 109.47453 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47015 * 299.99311 * 3 2 1 6 6 H 1.48503 * 109.47399 * 59.99148 * 3 2 1 7 7 C 1.37873 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00286 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46769 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.50365 * 54.92164 * 10 9 7 12 12 C 1.53030 * 109.53521 * 294.82056 * 10 9 7 13 13 N 1.46846 * 109.52377 * 180.86498 * 12 10 9 14 14 C 1.46846 * 111.19997 * 61.74000 * 13 12 10 15 15 C 1.53036 * 109.52162 * 298.26076 * 14 13 12 16 16 C 1.53118 * 109.28007 * 59.18140 * 15 14 13 17 17 H 1.08993 * 109.52399 * 62.24659 * 16 15 14 18 18 N 1.46901 * 109.52155 * 182.43976 * 16 15 14 19 19 H 0.96998 * 120.00152 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47243 * 59.99917 * 9 7 2 21 21 H 1.09000 * 109.47109 * 299.99228 * 9 7 2 22 22 H 1.08999 * 109.46586 * 60.84524 * 12 10 9 23 23 H 1.08998 * 109.46592 * 300.87872 * 12 10 9 24 24 H 1.00904 * 110.99845 * 297.64136 * 13 12 10 25 25 H 1.08998 * 109.45759 * 58.27846 * 14 13 12 26 26 H 1.09004 * 109.46280 * 178.24201 * 14 13 12 27 27 H 1.09008 * 109.49869 * 179.11730 * 15 14 13 28 28 H 1.09000 * 109.50168 * 299.23597 * 15 14 13 29 29 H 1.00894 * 110.99831 * 299.99758 * 18 16 15 30 30 H 1.00898 * 111.00045 * 63.95153 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9306 -3.5549 0.8414 12 6 3.0380 -3.6575 -1.3085 13 7 3.9777 -4.7859 -1.3170 14 6 3.2674 -6.0691 -1.2448 15 6 2.4815 -6.1456 0.0661 16 6 1.4846 -4.9850 0.1264 17 1 0.7715 -5.0744 -0.6930 18 7 0.7681 -5.0193 1.4084 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6241 -2.5567 0.8904 22 1 3.5921 -2.7228 -1.3944 23 1 2.3510 -3.7508 -2.1495 24 1 4.6501 -4.7022 -0.5693 25 1 2.5793 -6.1510 -2.0861 26 1 3.9881 -6.8859 -1.2844 27 1 1.9419 -7.0916 0.1122 28 1 3.1706 -6.0775 0.9080 29 1 0.2624 -5.8856 1.5168 30 1 1.4008 -4.8709 2.1802 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260905381.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:12 Heat of formation + Delta-G solvation = -19.670442 kcal Electronic energy + Delta-G solvation = -11627.295970 eV Core-core repulsion = 9649.205308 eV Total energy + Delta-G solvation = -1978.090662 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.75069 -33.82870 -33.21471 -31.09746 -28.65210 -26.30440 -23.35772 -22.21936 -20.81262 -19.45790 -16.23923 -15.75768 -15.19993 -14.43213 -14.34953 -13.98803 -13.12392 -13.03063 -12.15091 -11.98373 -11.73791 -11.23171 -11.15766 -10.88958 -10.72520 -10.43817 -10.19304 -9.81032 -9.30235 -8.89290 -8.30717 -8.27526 -7.72154 -5.90752 -3.92373 3.35205 3.42838 3.46325 4.51941 4.70641 4.99815 5.10211 5.27765 5.44596 5.46213 5.76589 5.82937 5.89897 6.07575 6.14022 6.31179 6.41374 6.76627 6.95626 7.05014 7.49836 7.62984 7.77894 7.81884 7.88087 8.01187 8.16764 8.52357 9.15687 9.70495 11.20202 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.055192 B = 0.011354 C = 0.009945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.194270 B = 2465.464836 C = 2814.689050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.886 3.114 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.517 4.517 8 H 0.053 0.947 9 C 0.037 3.963 10 C -0.106 4.106 11 H 0.052 0.948 12 C 0.067 3.933 13 N -0.692 5.692 14 C 0.062 3.938 15 C -0.191 4.191 16 C 0.095 3.905 17 H 0.074 0.926 18 N -0.833 5.833 19 H 0.258 0.742 20 H 0.011 0.989 21 H 0.033 0.967 22 H 0.086 0.914 23 H 0.066 0.934 24 H 0.334 0.666 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.328 0.672 30 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.869 -10.500 0.155 11.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.555 4.555 8 H 0.071 0.929 9 C -0.001 4.001 10 C -0.126 4.126 11 H 0.070 0.930 12 C -0.062 4.062 13 N -0.320 5.320 14 C -0.069 4.069 15 C -0.233 4.233 16 C -0.017 4.017 17 H 0.092 0.908 18 N -0.359 5.359 19 H 0.068 0.932 20 H 0.029 0.971 21 H 0.052 0.948 22 H 0.104 0.896 23 H 0.084 0.916 24 H 0.150 0.850 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.140 0.860 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.366 -9.749 -0.830 10.714 hybrid contribution 0.689 0.079 1.242 1.423 sum 5.055 -9.670 0.413 10.919 Atomic orbital electron populations 1.69990 1.05962 1.26183 1.51121 1.25000 0.94766 0.99013 0.95630 0.86629 0.80132 0.84298 0.77473 1.19848 1.21131 1.21190 1.21332 0.92807 0.91296 1.50095 0.92906 1.18997 0.93309 0.89775 0.97976 1.21897 0.98462 0.94994 0.97256 0.93000 1.22100 0.94132 0.92969 0.96979 1.60786 1.17764 1.02276 1.51157 1.21898 0.96597 0.92290 0.96069 1.23201 1.00363 1.00035 0.99669 1.21612 0.93606 0.94236 0.92204 0.90809 1.58789 1.32610 1.40691 1.03838 0.93242 0.97105 0.94829 0.89610 0.91579 0.84971 0.91260 0.91790 0.92582 0.92631 0.86025 0.85229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.30 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.52 -14.55 8.42 -34.44 -0.29 -14.84 16 8 H 0.05 1.44 7.07 -52.48 -0.37 1.07 16 9 C 0.04 0.96 4.38 -27.88 -0.12 0.84 16 10 C -0.11 -2.13 1.91 -90.54 -0.17 -2.31 16 11 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 12 C 0.07 1.28 5.64 -3.84 -0.02 1.25 16 13 N -0.69 -10.90 6.87 -113.82 -0.78 -11.68 16 14 C 0.06 0.86 6.55 -3.84 -0.03 0.83 16 15 C -0.19 -2.62 5.65 -26.65 -0.15 -2.77 16 16 C 0.10 1.63 2.74 -67.59 -0.18 1.44 16 17 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 18 N -0.83 -13.71 8.53 -4.56 -0.04 -13.75 16 19 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 20 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 21 H 0.03 0.95 7.54 -51.93 -0.39 0.56 16 22 H 0.09 1.77 6.99 -51.93 -0.36 1.40 16 23 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 24 H 0.33 4.91 8.86 -39.29 -0.35 4.57 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.33 4.49 9.04 -39.29 -0.36 4.14 16 30 H 0.34 5.24 8.98 -39.29 -0.35 4.89 16 LS Contribution 242.22 15.07 3.65 3.65 Total: -1.00 -30.10 242.22 -7.22 -37.32 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -4.70 Total: 8.13 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -1.06 Total: -14.00 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.08 Total: -52.00 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.10 -7.22 -37.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260905381.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.649 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds