Wall clock time and date at job start Mon Mar 30 2020 02:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00041 * 2 1 4 4 H 1.48497 * 109.47453 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47015 * 299.99311 * 3 2 1 6 6 H 1.48503 * 109.47399 * 59.99148 * 3 2 1 7 7 C 1.37873 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00286 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46769 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.50365 * 54.92164 * 10 9 7 12 12 C 1.53030 * 109.53521 * 294.82056 * 10 9 7 13 13 N 1.46846 * 109.52377 * 180.86498 * 12 10 9 14 14 C 1.46846 * 111.19997 * 61.74000 * 13 12 10 15 15 C 1.53036 * 109.52162 * 298.26076 * 14 13 12 16 16 C 1.53118 * 109.28007 * 59.18140 * 15 14 13 17 17 H 1.08993 * 109.52399 * 62.24659 * 16 15 14 18 18 N 1.46901 * 109.52155 * 182.43976 * 16 15 14 19 19 H 0.96998 * 120.00152 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47243 * 59.99917 * 9 7 2 21 21 H 1.09000 * 109.47109 * 299.99228 * 9 7 2 22 22 H 1.08999 * 109.46586 * 60.84524 * 12 10 9 23 23 H 1.08998 * 109.46592 * 300.87872 * 12 10 9 24 24 H 1.00904 * 110.99845 * 297.64136 * 13 12 10 25 25 H 1.08998 * 109.45759 * 58.27846 * 14 13 12 26 26 H 1.09004 * 109.46280 * 178.24201 * 14 13 12 27 27 H 1.09008 * 109.49869 * 179.11730 * 15 14 13 28 28 H 1.09000 * 109.50168 * 299.23597 * 15 14 13 29 29 H 1.00894 * 110.99831 * 299.99758 * 18 16 15 30 30 H 1.00898 * 111.00045 * 63.95153 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9306 -3.5549 0.8414 12 6 3.0380 -3.6575 -1.3085 13 7 3.9777 -4.7859 -1.3170 14 6 3.2674 -6.0691 -1.2448 15 6 2.4815 -6.1456 0.0661 16 6 1.4846 -4.9850 0.1264 17 1 0.7715 -5.0744 -0.6930 18 7 0.7681 -5.0193 1.4084 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6241 -2.5567 0.8904 22 1 3.5921 -2.7228 -1.3944 23 1 2.3510 -3.7508 -2.1495 24 1 4.6501 -4.7022 -0.5693 25 1 2.5793 -6.1510 -2.0861 26 1 3.9881 -6.8859 -1.2844 27 1 1.9419 -7.0916 0.1122 28 1 3.1706 -6.0775 0.9080 29 1 0.2624 -5.8856 1.5168 30 1 1.4008 -4.8709 2.1802 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260905381.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:12 Heat of formation + Delta-G solvation = -43.520911 kcal Electronic energy + Delta-G solvation = -11628.330204 eV Core-core repulsion = 9649.205308 eV Total energy + Delta-G solvation = -1979.124896 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.16319 -35.46531 -34.94976 -32.90385 -30.01998 -28.18250 -25.17358 -23.61806 -22.30596 -21.03817 -18.39616 -17.17056 -16.57183 -16.43054 -15.75507 -15.32366 -14.69497 -14.44444 -13.79407 -13.58373 -13.52921 -12.96754 -12.71413 -12.60378 -12.48252 -12.03276 -11.86865 -11.56298 -11.25164 -10.82559 -10.52685 -9.58576 -9.09028 -8.13536 -6.23162 1.40136 1.40489 1.53216 2.43471 3.19066 3.43804 3.73349 3.84871 4.01234 4.23195 4.35022 4.49563 4.59848 4.77272 4.86044 5.00253 5.07283 5.21731 5.26020 5.38598 5.60723 5.85713 5.96549 6.13584 6.30935 6.35478 6.55212 6.70863 6.95999 7.44814 8.98216 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.055192 B = 0.011354 C = 0.009945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.194270 B = 2465.464836 C = 2814.689050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.959 3.041 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.047 3.953 10 C -0.096 4.096 11 H 0.049 0.951 12 C 0.079 3.921 13 N -0.688 5.688 14 C 0.060 3.940 15 C -0.176 4.176 16 C 0.099 3.901 17 H 0.056 0.944 18 N -0.850 5.850 19 H 0.260 0.740 20 H -0.024 1.024 21 H 0.002 0.998 22 H 0.065 0.935 23 H 0.053 0.947 24 H 0.343 0.657 25 H 0.066 0.934 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.345 0.655 30 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.480 -11.463 0.337 13.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.784 3.216 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.568 4.568 8 H 0.077 0.923 9 C 0.009 3.991 10 C -0.117 4.117 11 H 0.068 0.932 12 C -0.051 4.051 13 N -0.316 5.316 14 C -0.070 4.070 15 C -0.217 4.217 16 C -0.013 4.013 17 H 0.075 0.925 18 N -0.379 5.379 19 H 0.069 0.931 20 H -0.005 1.005 21 H 0.020 0.980 22 H 0.084 0.916 23 H 0.072 0.928 24 H 0.161 0.839 25 H 0.084 0.916 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.159 0.841 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.995 -10.742 -0.643 12.319 hybrid contribution 0.148 0.341 1.191 1.248 sum 6.143 -10.402 0.548 12.093 Atomic orbital electron populations 1.70134 1.07784 1.27276 1.52302 1.25939 0.95650 1.03136 0.95241 0.85490 0.79217 0.79332 0.77547 1.18504 1.20637 1.20704 1.21736 0.93273 0.92381 1.49406 0.92295 1.18797 0.93661 0.91935 0.94683 1.21717 0.97344 0.94610 0.97982 0.93233 1.21799 0.94013 0.93691 0.95615 1.60732 1.17100 1.02046 1.51692 1.22034 0.97246 0.91820 0.95941 1.23029 0.99543 0.99185 0.99941 1.21436 0.93876 0.93947 0.92041 0.92527 1.58688 1.33242 1.42244 1.03748 0.93116 1.00521 0.97998 0.91643 0.92826 0.83932 0.91593 0.88710 0.90116 0.91718 0.84085 0.84619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.49 13.29 21.45 0.28 -58.21 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 7 C -0.53 -30.34 8.42 25.60 0.22 -30.12 16 8 H 0.06 3.23 7.07 -2.91 -0.02 3.21 16 9 C 0.05 2.53 4.38 29.85 0.13 2.66 16 10 C -0.10 -3.89 1.91 -10.74 -0.02 -3.91 16 11 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 12 C 0.08 2.98 5.64 86.32 0.49 3.46 16 13 N -0.69 -20.19 6.87 -514.03 -3.53 -23.71 16 14 C 0.06 1.45 6.55 86.33 0.57 2.02 16 15 C -0.18 -4.27 5.65 30.65 0.17 -4.10 16 16 C 0.10 3.29 2.74 45.00 0.12 3.41 16 17 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 18 N -0.85 -27.36 8.53 -168.35 -1.44 -28.79 16 19 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 20 H -0.02 -1.41 8.14 -2.39 -0.02 -1.43 16 21 H 0.00 0.10 7.54 -2.39 -0.02 0.08 16 22 H 0.07 2.70 6.99 -2.39 -0.02 2.69 16 23 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.34 9.18 8.86 -89.69 -0.79 8.38 16 25 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.35 8.93 9.04 -89.70 -0.81 8.12 16 30 H 0.34 10.30 8.98 -89.70 -0.81 9.49 16 Total: -1.00 -65.61 242.22 -1.79 -67.40 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -1.27 Total: 22.31 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 2.14 Total: -26.26 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -4.68 Total: -110.71 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -65.61 -1.79 -67.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260905381.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.875 kcal (2) G-P(sol) polarization free energy of solvation -65.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds