Wall clock time and date at job start Mon Mar 30 2020 02:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99301 * 3 2 1 5 5 H 1.48496 * 109.47547 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99701 * 3 2 1 7 7 C 1.37870 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.50575 * 55.07582 * 10 9 7 12 12 C 1.53038 * 109.50165 * 294.99766 * 10 9 7 13 13 N 1.46851 * 109.52410 * 180.87882 * 12 10 9 14 14 C 1.46853 * 111.19506 * 61.74191 * 13 12 10 15 15 C 1.53036 * 109.52234 * 298.25684 * 14 13 12 16 16 C 1.53117 * 109.50428 * 175.19280 * 10 9 7 17 17 H 1.09001 * 109.52505 * 297.50053 * 16 10 9 18 18 N 1.46909 * 109.52064 * 57.69051 * 16 10 9 19 19 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 21 21 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 22 22 H 1.08994 * 109.46197 * 300.89612 * 12 10 9 23 23 H 1.09000 * 109.46311 * 60.87610 * 12 10 9 24 24 H 1.00899 * 111.00421 * 297.64947 * 13 12 10 25 25 H 1.09001 * 109.46006 * 58.27312 * 14 13 12 26 26 H 1.08996 * 109.46088 * 178.24018 * 14 13 12 27 27 H 1.09004 * 109.50242 * 179.11948 * 15 14 13 28 28 H 1.08993 * 109.50509 * 299.24190 * 15 14 13 29 29 H 1.00899 * 110.99509 * 180.02562 * 18 16 10 30 30 H 1.00906 * 110.99796 * 303.95077 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 1 3.5887 -3.1755 -0.8417 12 6 3.6167 -3.3216 1.3081 13 7 4.1241 -4.6996 1.3176 14 6 5.5908 -4.7258 1.2506 15 6 6.0546 -4.0826 -0.0582 16 6 5.5481 -2.6389 -0.1194 17 1 5.8393 -2.1906 -1.0693 18 7 6.1290 -1.8675 0.9877 19 1 -0.4850 0.8400 -0.0004 20 1 3.8752 -0.6803 -0.8889 21 1 3.8746 -0.6798 0.8911 22 1 4.0379 -2.7737 2.1510 23 1 2.5298 -3.3344 1.3899 24 1 3.7183 -5.2396 0.5680 25 1 6.0028 -4.1713 2.0938 26 1 5.9378 -5.7583 1.2908 27 1 7.1438 -4.0881 -0.1005 28 1 5.6543 -4.6447 -0.9018 29 1 7.1363 -1.8543 0.9297 30 1 5.7561 -0.9302 1.0101 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260905383.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:17 Heat of formation + Delta-G solvation = -14.850367 kcal Electronic energy + Delta-G solvation = -11752.625662 eV Core-core repulsion = 9774.744014 eV Total energy + Delta-G solvation = -1977.881648 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.83346 -33.73242 -33.03484 -31.28465 -28.90497 -26.87816 -23.17519 -22.66328 -20.50131 -18.74988 -16.89277 -15.42467 -15.38955 -14.94671 -14.21331 -13.94310 -13.28616 -12.55753 -12.47937 -12.02359 -11.91637 -11.52740 -11.36203 -10.91552 -10.63229 -10.37319 -10.09924 -9.74686 -9.38394 -9.08818 -8.55888 -8.40346 -7.68652 -6.04227 -4.01699 3.28510 3.36650 3.38310 4.43853 4.85990 4.88101 5.19105 5.29238 5.36695 5.48445 5.77088 5.91411 6.02016 6.12016 6.14848 6.37952 6.52719 6.61578 6.76589 7.07937 7.16372 7.37882 7.50592 7.63962 7.78603 7.80580 7.94958 8.53904 9.00647 9.58205 11.09104 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.058128 B = 0.012414 C = 0.010919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.576931 B = 2254.952500 C = 2563.717578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.073 0.927 9 C -0.006 4.006 10 C -0.101 4.101 11 H 0.060 0.940 12 C 0.078 3.922 13 N -0.690 5.690 14 C 0.067 3.933 15 C -0.149 4.149 16 C 0.091 3.909 17 H 0.025 0.975 18 N -0.841 5.841 19 H 0.262 0.738 20 H 0.004 0.996 21 H 0.022 0.978 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.330 0.670 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.328 0.672 30 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.763 -4.968 0.246 12.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.091 0.909 9 C -0.044 4.044 10 C -0.122 4.122 11 H 0.079 0.921 12 C -0.051 4.051 13 N -0.317 5.317 14 C -0.063 4.063 15 C -0.188 4.188 16 C -0.020 4.020 17 H 0.043 0.957 18 N -0.372 5.372 19 H 0.072 0.928 20 H 0.022 0.978 21 H 0.040 0.960 22 H 0.094 0.906 23 H 0.099 0.901 24 H 0.146 0.854 25 H 0.099 0.901 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.139 0.861 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 11.229 -5.459 1.433 12.567 hybrid contribution 0.929 1.923 -1.928 2.877 sum 12.158 -3.536 -0.495 12.671 Atomic orbital electron populations 1.69912 1.06256 1.26800 1.51217 1.25030 0.94708 0.99072 0.94692 0.86786 0.80369 0.83867 0.78227 1.20615 1.21415 1.19121 1.21109 0.89288 0.94398 1.50499 0.90855 1.19558 0.97414 0.91582 0.95857 1.21728 0.91418 1.00005 0.99001 0.92114 1.21944 1.00320 0.86168 0.96695 1.60772 1.05797 1.14405 1.50748 1.21862 0.88911 0.98858 0.96674 1.22284 1.00194 0.96588 0.99781 1.21444 0.96418 0.92895 0.91281 0.95707 1.58778 1.09644 1.20644 1.48131 0.92786 0.97791 0.96020 0.90573 0.90137 0.85389 0.90131 0.92437 0.92613 0.92264 0.86089 0.83912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.51 -14.41 8.98 -34.44 -0.31 -14.72 16 8 H 0.07 2.21 7.30 -52.49 -0.38 1.83 16 9 C -0.01 -0.14 2.99 -27.88 -0.08 -0.23 16 10 C -0.10 -1.99 2.11 -90.54 -0.19 -2.18 16 11 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 12 C 0.08 1.51 5.49 -3.83 -0.02 1.49 16 13 N -0.69 -11.43 6.87 -113.81 -0.78 -12.21 16 14 C 0.07 0.97 6.41 -3.83 -0.02 0.95 16 15 C -0.15 -2.08 5.75 -26.65 -0.15 -2.23 16 16 C 0.09 1.49 3.14 -67.59 -0.21 1.27 16 17 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 18 N -0.84 -12.79 7.89 -4.56 -0.04 -12.83 16 19 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 20 H 0.00 0.09 7.57 -51.93 -0.39 -0.30 16 21 H 0.02 0.51 5.87 -51.93 -0.30 0.20 16 22 H 0.08 1.56 7.68 -51.93 -0.40 1.16 16 23 H 0.08 1.76 6.98 -51.93 -0.36 1.40 16 24 H 0.33 5.11 8.86 -39.29 -0.35 4.77 16 25 H 0.08 1.25 7.69 -51.93 -0.40 0.85 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.33 4.11 9.04 -39.29 -0.36 3.76 16 30 H 0.35 5.64 7.08 -39.29 -0.28 5.36 16 LS Contribution 234.35 15.07 3.53 3.53 Total: -1.00 -29.50 234.35 -6.78 -36.28 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -4.50 Total: 9.08 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -1.09 Total: -13.83 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.04 Total: -52.04 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -29.50 -6.78 -36.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260905383.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.428 kcal (2) G-P(sol) polarization free energy of solvation -29.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds