Wall clock time and date at job start Mon Mar 30 2020 02:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09005 * 109.50177 * 304.92127 * 10 9 7 12 12 C 1.53036 * 109.50691 * 64.99461 * 10 9 7 13 13 N 1.46835 * 109.52595 * 179.12117 * 12 10 9 14 14 C 1.46849 * 111.19998 * 298.26041 * 13 12 10 15 15 C 1.53037 * 109.52118 * 61.74191 * 14 13 12 16 16 C 1.53111 * 109.50609 * 184.80243 * 10 9 7 17 17 H 1.09000 * 109.52358 * 302.30924 * 16 10 9 18 18 N 1.46906 * 109.52274 * 62.49722 * 16 10 9 19 19 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 1.09002 * 109.46207 * 299.14499 * 12 10 9 23 23 H 1.08998 * 109.45859 * 59.10372 * 12 10 9 24 24 H 1.00908 * 111.00416 * 62.35855 * 13 12 10 25 25 H 1.09004 * 109.46268 * 181.75900 * 14 13 12 26 26 H 1.08993 * 109.46256 * 301.73535 * 14 13 12 27 27 H 1.09003 * 109.50268 * 60.76553 * 15 14 13 28 28 H 1.09005 * 109.50451 * 180.83977 * 15 14 13 29 29 H 1.00901 * 111.00077 * 180.02562 * 18 16 10 30 30 H 1.00899 * 111.00035 * 303.95626 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 1 3.5848 -3.1740 0.8525 12 6 3.6225 -3.3242 -1.2969 13 7 4.1298 -4.7021 -1.3015 14 6 5.5962 -4.7283 -1.2279 15 6 6.0542 -4.0827 0.0818 16 6 5.5474 -2.6389 0.1380 17 1 5.9822 -2.0681 -0.6825 18 7 5.9341 -2.0324 1.4188 19 1 -0.4849 0.8400 0.0004 20 1 3.8786 -0.6821 -0.8838 21 1 3.8711 -0.6785 0.8962 22 1 2.5360 -3.3369 -1.3837 23 1 4.0475 -2.7779 -2.1388 24 1 3.7206 -5.2407 -0.5527 25 1 5.9433 -5.7610 -1.2646 26 1 6.0120 -4.1753 -2.0701 27 1 5.6500 -4.6433 0.9247 28 1 7.1432 -4.0888 0.1294 29 1 6.9374 -2.0221 1.5258 30 1 5.5517 -1.1030 1.5089 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260905384.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:19 Heat of formation + Delta-G solvation = -40.503960 kcal Electronic energy + Delta-G solvation = -11674.524520 eV Core-core repulsion = 9695.530449 eV Total energy + Delta-G solvation = -1978.994071 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.18023 -35.56769 -34.88922 -33.13245 -30.20087 -28.65001 -24.99603 -23.61364 -22.14044 -20.83291 -18.92683 -16.79678 -16.61982 -16.43663 -16.08344 -15.69099 -14.95950 -14.33468 -13.86939 -13.76562 -13.39318 -13.16118 -12.93149 -12.63300 -12.28440 -11.89641 -11.78249 -11.71925 -11.33434 -10.84595 -10.76061 -9.59540 -9.24518 -8.27332 -6.30085 1.34065 1.35903 1.46830 2.35756 3.07228 3.40195 3.60369 3.91890 4.00883 4.22225 4.32688 4.49513 4.51022 4.78862 4.85975 4.93689 5.00014 5.05608 5.24018 5.33045 5.36856 5.57633 5.68335 6.12378 6.25179 6.30782 6.51716 6.63920 6.77049 7.33334 8.89330 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.052165 B = 0.012498 C = 0.010785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.632144 B = 2239.784248 C = 2595.624552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.949 3.051 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.246 1.246 7 C -0.519 4.519 8 H 0.033 0.967 9 C -0.001 4.001 10 C -0.094 4.094 11 H 0.047 0.953 12 C 0.078 3.922 13 N -0.691 5.691 14 C 0.058 3.942 15 C -0.139 4.139 16 C 0.096 3.904 17 H 0.031 0.969 18 N -0.852 5.852 19 H 0.264 0.736 20 H 0.012 0.988 21 H 0.021 0.979 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.341 0.659 25 H 0.096 0.904 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.347 0.653 30 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.488 -4.939 -0.791 15.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.773 3.227 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.169 1.169 7 C -0.557 4.557 8 H 0.052 0.948 9 C -0.039 4.039 10 C -0.115 4.115 11 H 0.065 0.935 12 C -0.052 4.052 13 N -0.319 5.319 14 C -0.071 4.071 15 C -0.179 4.179 16 C -0.015 4.015 17 H 0.049 0.951 18 N -0.384 5.384 19 H 0.073 0.927 20 H 0.030 0.970 21 H 0.039 0.961 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.159 0.841 25 H 0.115 0.885 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.161 0.839 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 13.934 -5.507 -1.164 15.028 hybrid contribution 0.136 1.893 0.468 1.955 sum 14.071 -3.614 -0.696 14.544 Atomic orbital electron populations 1.70073 1.08276 1.27956 1.53004 1.26006 0.95574 1.03412 0.94428 0.85672 0.79564 0.78497 0.78949 1.19467 1.21270 1.16913 1.21410 0.91818 0.92933 1.49586 0.94837 1.19487 0.94205 0.94284 0.95888 1.21622 0.94377 0.97305 0.98178 0.93483 1.21806 0.99495 0.88200 0.95731 1.60724 1.07306 1.12182 1.51639 1.22107 0.87254 1.01770 0.96014 1.22239 1.01751 0.94586 0.99310 1.21383 0.94310 0.95773 0.90067 0.95133 1.58755 1.16687 1.27929 1.35020 0.92673 0.96997 0.96080 0.92639 0.91855 0.84120 0.88543 0.91053 0.92062 0.89891 0.83940 0.84501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.27 13.96 21.45 0.30 -59.97 16 2 C 0.00 0.13 5.47 84.66 0.46 0.59 16 3 Si 0.95 44.40 27.47 68.60 1.88 46.29 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.25 -10.51 6.54 99.48 0.65 -9.86 16 7 C -0.52 -29.85 8.97 25.60 0.23 -29.62 16 8 H 0.03 2.13 7.30 -2.91 -0.02 2.11 16 9 C 0.00 -0.03 3.36 29.85 0.10 0.07 16 10 C -0.09 -3.67 1.98 -10.75 -0.02 -3.69 16 11 H 0.05 2.03 8.14 -2.38 -0.02 2.02 16 12 C 0.08 2.93 5.63 86.33 0.49 3.42 16 13 N -0.69 -20.95 6.87 -514.03 -3.53 -24.48 16 14 C 0.06 1.40 6.55 86.33 0.57 1.97 16 15 C -0.14 -3.42 5.66 30.64 0.17 -3.25 16 16 C 0.10 2.94 2.80 44.99 0.13 3.07 16 17 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 18 N -0.85 -24.77 9.24 -168.35 -1.56 -26.33 16 19 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 20 H 0.01 0.54 7.58 -2.38 -0.02 0.52 16 21 H 0.02 0.96 5.46 -2.39 -0.01 0.95 16 22 H 0.06 2.45 6.98 -2.39 -0.02 2.43 16 23 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 24 H 0.34 9.98 8.86 -89.69 -0.79 9.18 16 25 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.35 7.86 9.04 -89.69 -0.81 7.05 16 30 H 0.34 10.66 7.05 -89.69 -0.63 10.03 16 Total: -1.00 -64.73 236.29 -1.93 -66.66 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: -1.15 Total: 25.28 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 2.12 Total: -27.45 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -4.79 Total: -110.78 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.88 Total: 46.29 kcal Total: -64.73 -1.93 -66.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260905384.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.156 kcal (2) G-P(sol) polarization free energy of solvation -64.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds