Wall clock time and date at job start Mon Mar 30 2020 02:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00014 * 2 1 4 4 C 1.50700 * 109.46855 * 57.19737 * 3 2 1 5 5 H 1.07996 * 120.00112 * 235.85853 * 4 3 2 6 6 C 1.37874 * 119.99797 * 55.85668 * 4 3 2 7 7 N 1.31517 * 120.00136 * 353.36660 * 6 4 3 8 8 Si 1.86801 * 119.99987 * 173.35886 * 6 4 3 9 9 H 1.48506 * 109.46871 * 60.00209 * 8 6 4 10 10 H 1.48497 * 109.47378 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47211 * 300.00380 * 8 6 4 12 12 C 1.52999 * 109.47184 * 297.19795 * 3 2 1 13 13 C 1.53000 * 109.47112 * 300.00164 * 12 3 2 14 14 C 1.53001 * 109.46963 * 299.99708 * 13 12 3 15 15 C 1.52999 * 109.46968 * 60.00205 * 14 13 12 16 16 C 1.53000 * 109.47112 * 299.99704 * 15 14 13 17 17 H 1.09001 * 109.47222 * 61.72484 * 1 2 3 18 18 H 1.08997 * 109.46947 * 181.72284 * 1 2 3 19 19 H 1.08996 * 109.47052 * 301.72474 * 1 2 3 20 20 H 0.97005 * 119.99522 * 180.02562 * 7 6 4 21 21 H 1.09008 * 109.46877 * 59.99530 * 12 3 2 22 22 H 1.09002 * 109.47178 * 179.97438 * 12 3 2 23 23 H 1.09001 * 109.46874 * 180.02562 * 13 12 3 24 24 H 1.08996 * 109.47713 * 60.00028 * 13 12 3 25 25 H 1.09002 * 109.47155 * 300.00210 * 14 13 12 26 26 H 1.09005 * 109.47459 * 180.02562 * 14 13 12 27 27 H 1.09008 * 109.46877 * 180.02562 * 15 14 13 28 28 H 1.09002 * 109.47178 * 60.00020 * 15 14 13 29 29 H 1.08996 * 109.47713 * 299.99972 * 16 15 14 30 30 H 1.09001 * 109.46874 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5114 2.0774 1.1943 5 1 1.0261 3.0322 1.0558 6 6 1.6744 1.5646 2.4637 7 7 2.1455 0.3475 2.6257 8 14 1.2265 2.5988 3.9534 9 1 -0.2137 2.9560 3.8931 10 1 1.4934 1.8243 5.1920 11 1 2.0441 3.8384 3.9594 12 6 1.6154 2.0396 -1.2830 13 6 2.1218 1.2558 -2.4955 14 6 3.6455 1.1357 -2.4250 15 6 4.0403 0.4017 -1.1420 16 6 3.5339 1.1854 0.0705 17 1 -0.3634 0.4868 -0.9050 18 1 -0.3633 -1.0272 0.0309 19 1 -0.3633 0.5404 0.8741 20 1 2.2599 -0.0134 3.5189 21 1 0.5298 2.1251 -1.3332 22 1 2.0584 3.0355 -1.2828 23 1 1.8409 1.7791 -3.4095 24 1 1.6785 0.2601 -2.4956 25 1 4.0888 2.1315 -2.4250 26 1 4.0064 0.5777 -3.2890 27 1 5.1259 0.3165 -1.0916 28 1 3.5970 -0.5941 -1.1420 29 1 3.9772 2.1812 0.0706 30 1 3.8148 0.6622 0.9845 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260959115.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:37 Heat of formation + Delta-G solvation = -65.706502 kcal Electronic energy + Delta-G solvation = -12243.512594 eV Core-core repulsion = 10231.132908 eV Total energy + Delta-G solvation = -2012.379686 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.20677 -34.47678 -32.36006 -29.70724 -29.01478 -25.21973 -24.66061 -21.48229 -20.63752 -18.36532 -16.54998 -14.97009 -14.43255 -13.96200 -13.73057 -13.55480 -12.64624 -12.35048 -11.96194 -11.40386 -11.28008 -11.12942 -10.88800 -10.69091 -10.27925 -10.11615 -10.08143 -9.77988 -9.52026 -9.10164 -8.45364 -8.39907 -7.65617 -5.90883 -4.08892 3.30980 3.36616 3.39194 4.43020 5.25569 5.61080 5.67162 5.73611 5.84365 6.30427 6.41196 6.46452 6.51390 6.58290 6.61267 6.71863 6.81009 6.84092 6.92700 7.10698 7.17426 7.19188 7.43547 7.64616 7.82578 8.04257 8.32122 8.86915 9.22160 9.63219 11.08426 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.052690 B = 0.015716 C = 0.014849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.283541 B = 1781.148704 C = 1885.218346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.369 6.369 3 C 0.242 3.758 4 C -0.558 4.558 5 H 0.053 0.947 6 C 0.082 3.918 7 N -0.851 5.851 8 Si 0.880 3.120 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.277 1.277 12 C -0.137 4.137 13 C -0.113 4.113 14 C -0.112 4.112 15 C -0.117 4.117 16 C -0.090 4.090 17 H 0.008 0.992 18 H 0.046 0.954 19 H 0.043 0.957 20 H 0.258 0.742 21 H 0.048 0.952 22 H 0.052 0.948 23 H 0.039 0.961 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.039 0.961 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.462 0.841 -5.600 5.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 O -0.287 6.287 3 C 0.204 3.796 4 C -0.596 4.596 5 H 0.071 0.929 6 C -0.124 4.124 7 N -0.487 5.487 8 Si 0.708 3.292 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 C -0.175 4.175 13 C -0.151 4.151 14 C -0.150 4.150 15 C -0.155 4.155 16 C -0.127 4.127 17 H 0.026 0.974 18 H 0.065 0.935 19 H 0.061 0.939 20 H 0.068 0.932 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.640 0.522 -5.464 5.526 hybrid contribution -0.507 0.877 0.907 1.360 sum 0.133 1.399 -4.557 4.769 Atomic orbital electron populations 1.22127 0.85030 0.98487 0.98448 1.87809 1.16516 1.30010 1.94388 1.18899 0.90208 0.80881 0.89625 1.21470 1.40861 1.05784 0.91453 0.92895 1.24982 0.94466 0.94412 0.98554 1.70101 1.43037 1.13673 1.21843 0.86876 0.78982 0.80756 0.82629 1.20345 1.21275 1.20210 1.22138 0.99637 0.98991 0.96728 1.21452 0.95678 1.00631 0.97297 1.21485 0.96257 0.99649 0.97588 1.21557 0.98291 1.00235 0.95404 1.21353 0.95805 0.98114 0.97468 0.97398 0.93546 0.93868 0.93176 0.93299 0.92967 0.94190 0.92110 0.93127 0.93756 0.94243 0.91901 0.93669 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.30 10.32 101.05 1.04 2.35 16 2 O -0.37 -9.51 7.99 -35.23 -0.28 -9.79 16 3 C 0.24 6.02 0.30 -91.77 -0.03 5.99 16 4 C -0.56 -15.15 6.64 -34.44 -0.23 -15.38 16 5 H 0.05 1.44 7.75 -52.49 -0.41 1.03 16 6 C 0.08 2.24 5.04 -17.82 -0.09 2.15 16 7 N -0.85 -24.16 11.16 55.43 0.62 -23.54 16 8 Si 0.88 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C -0.14 -2.97 4.37 -26.73 -0.12 -3.09 16 13 C -0.11 -2.13 5.78 -26.73 -0.15 -2.29 16 14 C -0.11 -2.02 5.92 -26.73 -0.16 -2.18 16 15 C -0.12 -2.38 5.78 -26.73 -0.15 -2.54 16 16 C -0.09 -2.14 4.77 -26.73 -0.13 -2.27 16 17 H 0.01 0.16 6.57 -51.93 -0.34 -0.18 16 18 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 19 H 0.04 1.07 6.89 -51.93 -0.36 0.72 16 20 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 21 H 0.05 1.05 6.63 -51.92 -0.34 0.71 16 22 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 1.20 7.68 -51.93 -0.40 0.80 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 28 H 0.06 1.36 7.68 -51.93 -0.40 0.96 16 29 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.08 2.19 6.67 -51.93 -0.35 1.85 16 LS Contribution 234.11 15.07 3.53 3.53 Total: -1.00 -28.26 234.11 -5.86 -34.12 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -4.69 Total: -3.09 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -0.01 Total: -17.25 kcal Atomic # 7 Polarization: -24.16 SS G_CDS: 0.62 Total: -23.54 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.28 Total: -9.79 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -28.26 -5.86 -34.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260959115.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.586 kcal (2) G-P(sol) polarization free energy of solvation -28.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds