Wall clock time and date at job start Mon Mar 30 2020 02:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00014 * 2 1 4 4 C 1.50700 * 109.46855 * 57.19737 * 3 2 1 5 5 H 1.07996 * 120.00112 * 235.85853 * 4 3 2 6 6 C 1.37874 * 119.99797 * 55.85668 * 4 3 2 7 7 N 1.31517 * 120.00136 * 353.36660 * 6 4 3 8 8 Si 1.86801 * 119.99987 * 173.35886 * 6 4 3 9 9 H 1.48506 * 109.46871 * 60.00209 * 8 6 4 10 10 H 1.48497 * 109.47378 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47211 * 300.00380 * 8 6 4 12 12 C 1.52999 * 109.47184 * 297.19795 * 3 2 1 13 13 C 1.53000 * 109.47112 * 300.00164 * 12 3 2 14 14 C 1.53001 * 109.46963 * 299.99708 * 13 12 3 15 15 C 1.52999 * 109.46968 * 60.00205 * 14 13 12 16 16 C 1.53000 * 109.47112 * 299.99704 * 15 14 13 17 17 H 1.09001 * 109.47222 * 61.72484 * 1 2 3 18 18 H 1.08997 * 109.46947 * 181.72284 * 1 2 3 19 19 H 1.08996 * 109.47052 * 301.72474 * 1 2 3 20 20 H 0.97005 * 119.99522 * 180.02562 * 7 6 4 21 21 H 1.09008 * 109.46877 * 59.99530 * 12 3 2 22 22 H 1.09002 * 109.47178 * 179.97438 * 12 3 2 23 23 H 1.09001 * 109.46874 * 180.02562 * 13 12 3 24 24 H 1.08996 * 109.47713 * 60.00028 * 13 12 3 25 25 H 1.09002 * 109.47155 * 300.00210 * 14 13 12 26 26 H 1.09005 * 109.47459 * 180.02562 * 14 13 12 27 27 H 1.09008 * 109.46877 * 180.02562 * 15 14 13 28 28 H 1.09002 * 109.47178 * 60.00020 * 15 14 13 29 29 H 1.08996 * 109.47713 * 299.99972 * 16 15 14 30 30 H 1.09001 * 109.46874 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5114 2.0774 1.1943 5 1 1.0261 3.0322 1.0558 6 6 1.6744 1.5646 2.4637 7 7 2.1455 0.3475 2.6257 8 14 1.2265 2.5988 3.9534 9 1 -0.2137 2.9560 3.8931 10 1 1.4934 1.8243 5.1920 11 1 2.0441 3.8384 3.9594 12 6 1.6154 2.0396 -1.2830 13 6 2.1218 1.2558 -2.4955 14 6 3.6455 1.1357 -2.4250 15 6 4.0403 0.4017 -1.1420 16 6 3.5339 1.1854 0.0705 17 1 -0.3634 0.4868 -0.9050 18 1 -0.3633 -1.0272 0.0309 19 1 -0.3633 0.5404 0.8741 20 1 2.2599 -0.0134 3.5189 21 1 0.5298 2.1251 -1.3332 22 1 2.0584 3.0355 -1.2828 23 1 1.8409 1.7791 -3.4095 24 1 1.6785 0.2601 -2.4956 25 1 4.0888 2.1315 -2.4250 26 1 4.0064 0.5777 -3.2890 27 1 5.1259 0.3165 -1.0916 28 1 3.5970 -0.5941 -1.1420 29 1 3.9772 2.1812 0.0706 30 1 3.8148 0.6622 0.9845 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260959115.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:36 Heat of formation + Delta-G solvation = -82.229494 kcal Electronic energy + Delta-G solvation = -12244.229085 eV Core-core repulsion = 10231.132908 eV Total energy + Delta-G solvation = -2013.096177 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.00071 -36.23046 -34.42322 -31.39035 -30.83182 -27.16191 -26.55951 -23.16930 -22.36012 -20.11072 -18.57208 -16.86267 -16.30504 -15.77771 -15.52110 -15.31572 -14.32964 -14.02670 -13.84708 -13.26737 -13.05243 -12.80632 -12.77471 -12.53871 -12.11728 -11.93514 -11.74069 -11.56767 -11.19706 -10.87864 -10.51526 -10.25130 -9.58761 -7.98469 -6.22784 1.39557 1.41317 1.47921 2.42924 3.18275 3.78194 4.13480 4.21555 4.29089 4.65226 4.76818 4.81968 4.88389 4.93664 4.96109 4.99898 5.10585 5.25696 5.27869 5.33819 5.45315 5.52081 5.67804 5.72024 5.82560 6.12702 6.28914 6.81113 7.26194 7.55331 8.99006 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.052690 B = 0.015716 C = 0.014849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.283541 B = 1781.148704 C = 1885.218346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 O -0.388 6.388 3 C 0.230 3.770 4 C -0.573 4.573 5 H 0.045 0.955 6 C 0.039 3.961 7 N -0.878 5.878 8 Si 0.936 3.064 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.272 1.272 12 C -0.133 4.133 13 C -0.109 4.109 14 C -0.108 4.108 15 C -0.111 4.111 16 C -0.089 4.089 17 H 0.027 0.973 18 H 0.064 0.936 19 H 0.017 0.983 20 H 0.256 0.744 21 H 0.044 0.956 22 H 0.053 0.947 23 H 0.070 0.930 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.587 1.361 -6.842 7.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.307 6.307 3 C 0.192 3.808 4 C -0.611 4.611 5 H 0.063 0.937 6 C -0.164 4.164 7 N -0.514 5.514 8 Si 0.762 3.238 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.197 1.197 12 C -0.171 4.171 13 C -0.146 4.146 14 C -0.145 4.145 15 C -0.149 4.149 16 C -0.127 4.127 17 H 0.046 0.954 18 H 0.083 0.917 19 H 0.036 0.964 20 H 0.066 0.934 21 H 0.062 0.938 22 H 0.072 0.928 23 H 0.088 0.912 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.759 1.051 -6.713 6.837 hybrid contribution -0.568 0.717 1.295 1.585 sum 0.192 1.768 -5.418 5.703 Atomic orbital electron populations 1.22167 0.83981 0.99539 0.98170 1.87768 1.17771 1.30628 1.94524 1.19046 0.90615 0.80647 0.90447 1.21802 1.40674 1.05681 0.92901 0.93707 1.25606 0.94522 0.95296 1.00969 1.70225 1.44122 1.14976 1.22095 0.85978 0.78747 0.79393 0.79646 1.20005 1.21050 1.19735 1.22038 0.99466 0.99058 0.96547 1.21425 0.96260 0.99897 0.97027 1.21469 0.95610 1.00341 0.97087 1.21473 0.99265 0.98979 0.95170 1.21268 0.95628 0.98128 0.97683 0.95415 0.91717 0.96443 0.93444 0.93752 0.92808 0.91152 0.93073 0.92032 0.90718 0.92327 0.93578 0.93695 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.68 10.32 113.37 1.17 3.85 16 2 O -0.39 -19.98 7.99 -148.98 -1.19 -21.18 16 3 C 0.23 11.41 0.30 -11.54 0.00 11.40 16 4 C -0.57 -31.31 6.64 25.60 0.17 -31.14 16 5 H 0.04 2.45 7.75 -2.91 -0.02 2.43 16 6 C 0.04 2.17 5.04 84.65 0.43 2.60 16 7 N -0.88 -50.68 11.16 21.45 0.24 -50.44 16 8 Si 0.94 43.48 29.54 68.60 2.03 45.51 16 9 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 12 C -0.13 -5.56 4.37 30.59 0.13 -5.43 16 13 C -0.11 -3.77 5.78 30.59 0.18 -3.59 16 14 C -0.11 -3.50 5.92 30.59 0.18 -3.32 16 15 C -0.11 -4.34 5.78 30.59 0.18 -4.16 16 16 C -0.09 -4.24 4.77 30.59 0.15 -4.10 16 17 H 0.03 1.13 6.57 -2.39 -0.02 1.12 16 18 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 19 H 0.02 0.86 6.89 -2.39 -0.02 0.84 16 20 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 21 H 0.04 1.85 6.63 -2.38 -0.02 1.83 16 22 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 23 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.05 1.88 7.68 -2.39 -0.02 1.86 16 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.05 1.94 7.68 -2.39 -0.02 1.92 16 29 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.05 2.49 6.67 -2.39 -0.02 2.48 16 Total: -1.00 -59.82 234.11 4.74 -55.08 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: 1.09 Total: 4.92 kcal Atomic # 6 Polarization: -36.47 SS G_CDS: 2.58 Total: -33.90 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.24 Total: -50.44 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -1.19 Total: -21.18 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -59.82 4.74 -55.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260959115.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.151 kcal (2) G-P(sol) polarization free energy of solvation -59.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds