Wall clock time and date at job start Mon Mar 30 2020 01:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.43216 * 2 1 4 4 C 1.54888 * 110.48919 * 237.31354 * 2 1 3 5 5 C 1.54883 * 102.75246 * 203.37815 * 4 2 1 6 6 C 1.54269 * 104.19287 * 37.94286 * 5 4 2 7 7 H 1.08998 * 110.07267 * 217.07929 * 6 5 4 8 8 C 1.53004 * 110.03214 * 95.67793 * 6 5 4 9 9 C 1.53871 * 106.59875 * 336.38986 * 6 5 4 10 10 O 1.42904 * 110.02952 * 119.33551 * 9 6 5 11 11 C 1.50702 * 110.03381 * 240.71178 * 9 6 5 12 12 H 1.08002 * 119.99900 * 114.69710 * 11 9 6 13 13 C 1.37879 * 120.00134 * 294.70020 * 11 9 6 14 14 N 1.31517 * 119.99961 * 4.94137 * 13 11 9 15 15 Si 1.86800 * 119.99870 * 184.94290 * 13 11 9 16 16 H 1.48503 * 109.46952 * 89.99646 * 15 13 11 17 17 H 1.48498 * 109.46971 * 209.99619 * 15 13 11 18 18 H 1.48491 * 109.47213 * 330.00129 * 15 13 11 19 19 H 1.09003 * 109.47239 * 302.28060 * 1 2 3 20 20 H 1.08994 * 109.46804 * 62.28126 * 1 2 3 21 21 H 1.09002 * 109.46586 * 182.27946 * 1 2 3 22 22 H 1.08997 * 110.75847 * 321.69869 * 4 2 1 23 23 H 1.09003 * 110.75446 * 84.87733 * 4 2 1 24 24 H 1.09005 * 110.48834 * 279.26796 * 5 4 2 25 25 H 1.08996 * 110.48937 * 156.62116 * 5 4 2 26 26 H 1.08999 * 109.46513 * 302.83020 * 8 6 5 27 27 H 1.08998 * 109.47023 * 182.83381 * 8 6 5 28 28 H 1.08993 * 109.47279 * 62.82992 * 8 6 5 29 29 H 0.96704 * 113.99339 * 179.97438 * 10 9 6 30 30 H 0.96999 * 119.99792 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0722 -0.7835 -1.2211 5 6 3.4907 -1.1989 -0.7585 6 6 3.3165 -1.5395 0.7360 7 1 4.1927 -1.2161 1.2980 8 6 3.1098 -3.0456 0.9096 9 6 2.0699 -0.7773 1.2182 10 8 1.0841 -1.6989 1.6883 11 6 2.4449 0.1823 2.3181 12 1 2.3533 1.2468 2.1604 13 6 2.9049 -0.2987 3.5256 14 7 3.1089 -1.5881 3.6851 15 14 3.2384 0.8811 4.9350 16 1 2.0069 1.0395 5.7497 17 1 4.3287 0.3402 5.7858 18 1 3.6444 2.2013 4.3899 19 1 -0.3634 0.5489 0.8688 20 1 -0.3633 0.4780 -0.9097 21 1 -0.3632 -1.0269 0.0409 22 1 1.4582 -1.6618 -1.4202 23 1 2.1221 -0.1417 -2.1007 24 1 4.1898 -0.3717 -0.8822 25 1 3.8316 -2.0738 -1.3119 26 1 2.2468 -3.3636 0.3247 27 1 2.9377 -3.2697 1.9623 28 1 3.9975 -3.5762 0.5656 29 1 0.2733 -1.2789 2.0067 30 1 3.4322 -1.9266 4.5347 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260966854.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:40 Heat of formation + Delta-G solvation = -70.807398 kcal Electronic energy + Delta-G solvation = -12246.496757 eV Core-core repulsion = 10233.895879 eV Total energy + Delta-G solvation = -2012.600878 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.29720 -33.44874 -32.27716 -31.16109 -27.66491 -26.67824 -23.20298 -22.89676 -19.07971 -18.11904 -16.81075 -15.15044 -14.51339 -13.98286 -13.72508 -12.98042 -12.44195 -11.88121 -11.45814 -11.37154 -11.25802 -11.13023 -10.88205 -10.58022 -10.41199 -10.08804 -9.88108 -9.68204 -9.41295 -9.26485 -8.68408 -8.30843 -7.87486 -5.91729 -4.08022 3.30448 3.38027 3.40654 4.44213 5.31659 5.63782 5.67422 5.76432 6.16019 6.21120 6.30575 6.46150 6.49806 6.59209 6.69129 6.76218 6.79345 6.92978 7.02794 7.08175 7.25656 7.30704 7.68678 7.83858 7.98587 8.04719 8.37874 8.93094 9.48112 9.69462 11.09336 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.044896 B = 0.017279 C = 0.015286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.508315 B = 1620.116776 C = 1831.261840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 H 0.064 0.936 4 C -0.115 4.115 5 C -0.126 4.126 6 C -0.054 4.054 7 H 0.071 0.929 8 C -0.116 4.116 9 C 0.261 3.739 10 O -0.555 6.555 11 C -0.559 4.559 12 H 0.053 0.947 13 C 0.081 3.919 14 N -0.852 5.852 15 Si 0.882 3.118 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.276 1.276 19 H 0.050 0.950 20 H 0.035 0.965 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.044 0.956 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.031 0.969 27 H 0.084 0.916 28 H 0.012 0.988 29 H 0.344 0.656 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 0.909 -5.277 5.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.141 4.141 3 H 0.082 0.918 4 C -0.153 4.153 5 C -0.164 4.164 6 C -0.073 4.073 7 H 0.089 0.911 8 C -0.174 4.174 9 C 0.222 3.778 10 O -0.359 6.359 11 C -0.597 4.597 12 H 0.072 0.928 13 C -0.125 4.125 14 N -0.488 5.488 15 Si 0.710 3.290 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.201 1.201 19 H 0.069 0.931 20 H 0.054 0.946 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.103 0.897 28 H 0.031 0.969 29 H 0.188 0.812 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.292 0.315 -5.321 5.485 hybrid contribution -0.132 1.180 0.979 1.539 sum -1.424 1.495 -4.341 4.807 Atomic orbital electron populations 1.21675 0.96626 1.01364 0.99864 1.22676 0.94594 0.99510 0.97341 0.91759 1.22467 0.96881 0.99002 0.96905 1.22513 0.96214 0.99279 0.98380 1.21510 0.99024 0.95422 0.91354 0.91093 1.21473 0.96853 0.95221 1.03812 1.19164 0.84879 0.85531 0.88240 1.86498 1.27965 1.37221 1.84174 1.21677 1.46392 0.92882 0.98762 0.92850 1.24984 0.94402 0.94783 0.98333 1.70028 1.42869 1.11855 1.24041 0.86780 0.77870 0.81546 0.82792 1.20739 1.21325 1.20073 0.93079 0.94596 0.92363 0.92413 0.93746 0.92973 0.93288 0.95006 0.89689 0.96913 0.81174 0.93295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.13 37.16 0.30 -2.22 16 2 C -0.12 -2.57 2.96 -88.96 -0.26 -2.83 16 3 H 0.06 1.39 7.66 -51.93 -0.40 0.99 16 4 C -0.11 -2.19 6.33 -24.74 -0.16 -2.35 16 5 C -0.13 -2.54 6.37 -25.07 -0.16 -2.70 16 6 C -0.05 -1.30 2.38 -89.50 -0.21 -1.51 16 7 H 0.07 1.89 7.32 -51.93 -0.38 1.51 16 8 C -0.12 -2.72 8.02 37.16 0.30 -2.42 16 9 C 0.26 6.37 0.75 -90.66 -0.07 6.31 16 10 O -0.56 -13.76 9.49 -35.23 -0.33 -14.10 16 11 C -0.56 -15.07 7.97 -34.44 -0.27 -15.35 16 12 H 0.05 1.45 7.53 -52.49 -0.40 1.05 16 13 C 0.08 2.20 5.10 -17.82 -0.09 2.10 16 14 N -0.85 -23.91 10.59 55.43 0.59 -23.33 16 15 Si 0.88 21.03 29.54 -169.99 -5.02 16.01 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 H 0.05 0.92 8.05 -51.93 -0.42 0.51 16 20 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.06 1.06 7.10 -51.93 -0.37 0.69 16 22 H 0.06 1.09 8.06 -51.93 -0.42 0.67 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.05 0.90 7.84 -51.93 -0.41 0.50 16 26 H 0.03 0.71 7.87 -51.93 -0.41 0.30 16 27 H 0.08 2.23 6.49 -51.93 -0.34 1.89 16 28 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.34 7.86 7.61 45.56 0.35 8.21 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 LS Contribution 235.35 15.07 3.55 3.55 Total: -1.00 -28.01 235.35 -5.86 -33.87 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -4.01 Total: 4.96 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -0.63 Total: -20.96 kcal Atomic # 7 Polarization: -23.91 SS G_CDS: 0.59 Total: -23.33 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.33 Total: -14.10 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -28.01 -5.86 -33.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966854.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.939 kcal (2) G-P(sol) polarization free energy of solvation -28.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds