Wall clock time and date at job start Mon Mar 30 2020 01:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.43216 * 2 1 4 4 C 1.54888 * 110.48919 * 237.31354 * 2 1 3 5 5 C 1.54883 * 102.75246 * 203.37815 * 4 2 1 6 6 C 1.54269 * 104.19287 * 37.94286 * 5 4 2 7 7 H 1.08998 * 110.07267 * 217.07929 * 6 5 4 8 8 C 1.53004 * 110.03214 * 95.67793 * 6 5 4 9 9 C 1.53871 * 106.59875 * 336.38986 * 6 5 4 10 10 O 1.42904 * 110.02952 * 119.33551 * 9 6 5 11 11 C 1.50702 * 110.03381 * 240.71178 * 9 6 5 12 12 H 1.08002 * 119.99900 * 114.69710 * 11 9 6 13 13 C 1.37879 * 120.00134 * 294.70020 * 11 9 6 14 14 N 1.31517 * 119.99961 * 4.94137 * 13 11 9 15 15 Si 1.86800 * 119.99870 * 184.94290 * 13 11 9 16 16 H 1.48503 * 109.46952 * 89.99646 * 15 13 11 17 17 H 1.48498 * 109.46971 * 209.99619 * 15 13 11 18 18 H 1.48491 * 109.47213 * 330.00129 * 15 13 11 19 19 H 1.09003 * 109.47239 * 302.28060 * 1 2 3 20 20 H 1.08994 * 109.46804 * 62.28126 * 1 2 3 21 21 H 1.09002 * 109.46586 * 182.27946 * 1 2 3 22 22 H 1.08997 * 110.75847 * 321.69869 * 4 2 1 23 23 H 1.09003 * 110.75446 * 84.87733 * 4 2 1 24 24 H 1.09005 * 110.48834 * 279.26796 * 5 4 2 25 25 H 1.08996 * 110.48937 * 156.62116 * 5 4 2 26 26 H 1.08999 * 109.46513 * 302.83020 * 8 6 5 27 27 H 1.08998 * 109.47023 * 182.83381 * 8 6 5 28 28 H 1.08993 * 109.47279 * 62.82992 * 8 6 5 29 29 H 0.96704 * 113.99339 * 179.97438 * 10 9 6 30 30 H 0.96999 * 119.99792 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0722 -0.7835 -1.2211 5 6 3.4907 -1.1989 -0.7585 6 6 3.3165 -1.5395 0.7360 7 1 4.1927 -1.2161 1.2980 8 6 3.1098 -3.0456 0.9096 9 6 2.0699 -0.7773 1.2182 10 8 1.0841 -1.6989 1.6883 11 6 2.4449 0.1823 2.3181 12 1 2.3533 1.2468 2.1604 13 6 2.9049 -0.2987 3.5256 14 7 3.1089 -1.5881 3.6851 15 14 3.2384 0.8811 4.9350 16 1 2.0069 1.0395 5.7497 17 1 4.3287 0.3402 5.7858 18 1 3.6444 2.2013 4.3899 19 1 -0.3634 0.5489 0.8688 20 1 -0.3633 0.4780 -0.9097 21 1 -0.3632 -1.0269 0.0409 22 1 1.4582 -1.6618 -1.4202 23 1 2.1221 -0.1417 -2.1007 24 1 4.1898 -0.3717 -0.8822 25 1 3.8316 -2.0738 -1.3119 26 1 2.2468 -3.3636 0.3247 27 1 2.9377 -3.2697 1.9623 28 1 3.9975 -3.5762 0.5656 29 1 0.2733 -1.2789 2.0067 30 1 3.4322 -1.9266 4.5347 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260966854.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:40 Heat of formation + Delta-G solvation = -88.258100 kcal Electronic energy + Delta-G solvation = -12247.253476 eV Core-core repulsion = 10233.895879 eV Total energy + Delta-G solvation = -2013.357597 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.06402 -35.28798 -34.29022 -32.89660 -29.40221 -28.56220 -25.00284 -24.64447 -20.75920 -19.97422 -18.78737 -16.92075 -16.52556 -15.78817 -15.48510 -14.64448 -14.14774 -13.62835 -13.30055 -13.18063 -13.01600 -12.81481 -12.76315 -12.39087 -12.28432 -11.86511 -11.57576 -11.35427 -11.13317 -11.07210 -10.64372 -10.28547 -9.78185 -7.98438 -6.20779 1.39538 1.42042 1.49997 2.44345 3.22994 4.00597 4.03995 4.17016 4.48875 4.65430 4.72306 4.84662 4.88271 4.96905 5.06377 5.11390 5.18852 5.25530 5.35658 5.44012 5.50850 5.68379 5.75946 5.81668 6.08292 6.11173 6.36358 6.87834 7.46085 7.73389 9.00394 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.044896 B = 0.017279 C = 0.015286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.508315 B = 1620.116776 C = 1831.261840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.123 4.123 3 H 0.053 0.947 4 C -0.106 4.106 5 C -0.121 4.121 6 C -0.061 4.061 7 H 0.032 0.968 8 C -0.105 4.105 9 C 0.249 3.751 10 O -0.565 6.565 11 C -0.575 4.575 12 H 0.044 0.956 13 C 0.036 3.964 14 N -0.876 5.876 15 Si 0.940 3.060 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.274 1.274 19 H 0.044 0.956 20 H 0.062 0.938 21 H 0.057 0.943 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.037 0.963 27 H 0.051 0.949 28 H 0.030 0.970 29 H 0.349 0.651 30 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.242 1.378 -6.490 7.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.142 4.142 3 H 0.072 0.928 4 C -0.144 4.144 5 C -0.159 4.159 6 C -0.080 4.080 7 H 0.051 0.949 8 C -0.162 4.162 9 C 0.210 3.790 10 O -0.369 6.369 11 C -0.613 4.613 12 H 0.063 0.937 13 C -0.167 4.167 14 N -0.512 5.512 15 Si 0.767 3.233 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.199 1.199 19 H 0.063 0.937 20 H 0.081 0.919 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.092 0.908 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.194 0.806 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.707 0.793 -6.539 6.805 hybrid contribution 0.008 1.039 1.368 1.718 sum -1.699 1.832 -5.171 5.743 Atomic orbital electron populations 1.21597 0.94568 1.01609 1.01019 1.22596 0.96427 0.98552 0.96659 0.92818 1.22430 0.95645 0.99365 0.96912 1.22465 0.97448 1.00372 0.95607 1.21463 0.97342 0.95502 0.93663 0.94914 1.21309 0.97870 0.95303 1.01747 1.19300 0.85229 0.85516 0.88993 1.86475 1.28313 1.37661 1.84458 1.22016 1.46219 0.93017 1.00024 0.93740 1.25635 0.94444 0.96124 1.00513 1.70163 1.43635 1.13147 1.24256 0.85864 0.77667 0.79695 0.80091 1.20304 1.21275 1.19857 0.93674 0.91859 0.92383 0.91897 0.90793 0.92475 0.91311 0.94364 0.93017 0.95141 0.80642 0.93607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 8.13 71.98 0.59 -3.88 16 2 C -0.12 -4.95 2.96 -9.72 -0.03 -4.98 16 3 H 0.05 2.24 7.66 -2.39 -0.02 2.23 16 4 C -0.11 -3.70 6.33 31.88 0.20 -3.49 16 5 C -0.12 -4.61 6.37 31.67 0.20 -4.41 16 6 C -0.06 -2.88 2.38 -10.07 -0.02 -2.90 16 7 H 0.03 1.76 7.32 -2.39 -0.02 1.75 16 8 C -0.10 -4.85 8.02 71.98 0.58 -4.28 16 9 C 0.25 12.05 0.75 -10.82 -0.01 12.05 16 10 O -0.57 -27.93 9.49 -148.98 -1.41 -29.34 16 11 C -0.57 -31.20 7.97 25.60 0.20 -31.00 16 12 H 0.04 2.42 7.53 -2.91 -0.02 2.40 16 13 C 0.04 1.98 5.10 84.65 0.43 2.41 16 14 N -0.88 -49.98 10.59 21.45 0.23 -49.75 16 15 Si 0.94 43.57 29.54 68.60 2.03 45.60 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 17 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 19 H 0.04 1.56 8.05 -2.39 -0.02 1.54 16 20 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 21 H 0.06 1.97 7.10 -2.39 -0.02 1.96 16 22 H 0.06 2.14 8.06 -2.39 -0.02 2.12 16 23 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 25 H 0.07 2.33 7.84 -2.39 -0.02 2.31 16 26 H 0.04 1.67 7.87 -2.39 -0.02 1.65 16 27 H 0.05 2.73 6.49 -2.39 -0.02 2.71 16 28 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.35 15.93 7.61 -74.05 -0.56 15.36 16 30 H 0.25 14.06 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -59.06 235.35 3.52 -55.54 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.54 Total: 18.44 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 2.14 Total: -40.47 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.23 Total: -49.75 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -1.41 Total: -29.34 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -59.06 3.52 -55.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966854.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.723 kcal (2) G-P(sol) polarization free energy of solvation -59.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds