Wall clock time and date at job start Mon Mar 30 2020 02:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 114.00203 * 2 1 4 4 H 1.09002 * 109.46657 * 182.23393 * 3 2 1 5 5 C 1.50694 * 109.47065 * 302.23009 * 3 2 1 6 6 H 1.08005 * 119.99855 * 119.99661 * 5 3 2 7 7 C 1.37875 * 120.00220 * 300.00295 * 5 3 2 8 8 N 1.31511 * 120.00002 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99928 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46902 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.46942 * 299.99815 * 9 7 5 12 12 H 1.48498 * 109.46937 * 59.99933 * 9 7 5 13 13 C 1.52997 * 109.46948 * 62.23253 * 3 2 1 14 14 C 1.54267 * 110.03039 * 173.12245 * 13 3 2 15 15 C 1.54961 * 104.16009 * 217.13660 * 14 13 3 16 16 C 1.54890 * 102.78110 * 37.89001 * 15 14 13 17 17 C 1.53878 * 110.03261 * 55.90635 * 13 3 2 18 18 H 1.08991 * 109.47215 * 179.85433 * 1 2 3 19 19 H 1.09003 * 109.46933 * 299.85837 * 1 2 3 20 20 H 1.08998 * 109.46409 * 59.85506 * 1 2 3 21 21 H 0.96996 * 120.00001 * 359.97438 * 8 7 5 22 22 H 1.08995 * 110.01836 * 294.51322 * 13 3 2 23 23 H 1.09003 * 110.48403 * 335.78493 * 14 13 3 24 24 H 1.09002 * 110.48631 * 98.42447 * 14 13 3 25 25 H 1.09003 * 110.72453 * 279.57041 * 15 14 13 26 26 H 1.09005 * 110.76788 * 156.22222 * 15 14 13 27 27 H 1.08999 * 110.48742 * 203.41013 * 16 15 14 28 28 H 1.08996 * 110.60201 * 80.81275 * 16 15 14 29 29 H 1.08997 * 110.03001 * 238.56754 * 17 13 3 30 30 H 1.08993 * 110.03429 * 359.94843 * 17 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 3.0962 1.2196 -0.0401 5 6 1.5224 2.0725 -1.2018 6 1 0.9769 2.9951 -1.0686 7 6 1.7723 1.5966 -2.4715 8 7 2.4361 0.4729 -2.6337 9 14 1.1669 2.5472 -3.9613 10 1 1.5610 1.8294 -5.2001 11 1 -0.3125 2.6635 -3.9065 12 1 1.7704 3.9040 -3.9614 13 6 1.6038 2.0447 1.2764 14 6 2.3597 3.3859 1.3737 15 6 2.6636 3.5410 2.8853 16 6 2.9928 2.0910 3.3191 17 6 2.0058 1.2216 2.5129 18 1 -0.3633 -1.0276 -0.0026 19 1 -0.3633 0.5116 0.8913 20 1 -0.3632 0.5161 -0.8887 21 1 2.7501 -0.0208 -1.8601 22 1 0.5283 2.2212 1.2789 23 1 3.2861 3.3442 0.8007 24 1 1.7305 4.2046 1.0243 25 1 1.7892 3.9146 3.4182 26 1 3.5214 4.1952 3.0419 27 1 2.8257 1.9656 4.3889 28 1 4.0215 1.8380 3.0623 29 1 1.1254 0.9995 3.1158 30 1 2.4896 0.2952 2.2037 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261119646.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:55 Heat of formation + Delta-G solvation = -93.551276 kcal Electronic energy + Delta-G solvation = -11906.538537 eV Core-core repulsion = 9892.951410 eV Total energy + Delta-G solvation = -2013.587127 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.99316 -37.46762 -34.50740 -31.04812 -29.50820 -27.70892 -26.99915 -23.67928 -21.50295 -20.41697 -19.08825 -17.14937 -16.64124 -16.06737 -15.85030 -15.53032 -14.76094 -14.24246 -14.09090 -13.88635 -12.71646 -12.58619 -12.50445 -12.06823 -11.95880 -11.89563 -11.84323 -11.53889 -11.50942 -11.30639 -10.73478 -10.56305 -9.81462 -8.55478 -6.37832 1.51068 1.58335 1.77595 2.56609 3.15037 3.55927 3.83994 3.89307 3.91335 4.49296 4.56199 4.61503 4.71827 4.76122 4.82356 4.85103 4.92415 5.03990 5.04519 5.12003 5.24009 5.37783 5.48277 5.49093 5.62427 5.95132 6.19012 6.60379 6.86471 7.53087 8.81006 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.048918 B = 0.013951 C = 0.012111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.250743 B = 2006.565622 C = 2311.323405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.422 6.422 3 C 0.203 3.797 4 H 0.018 0.982 5 C -0.634 4.634 6 H 0.046 0.954 7 C -0.018 4.018 8 N -0.923 5.923 9 Si 1.107 2.893 10 H -0.286 1.286 11 H -0.272 1.272 12 H -0.270 1.270 13 C -0.104 4.104 14 C -0.104 4.104 15 C -0.116 4.116 16 C -0.118 4.118 17 C -0.115 4.115 18 H 0.074 0.926 19 H 0.036 0.964 20 H 0.021 0.979 21 H 0.266 0.734 22 H 0.052 0.948 23 H 0.044 0.956 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.057 4.607 9.020 10.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 O -0.342 6.342 3 C 0.147 3.853 4 H 0.035 0.965 5 C -0.672 4.672 6 H 0.065 0.935 7 C -0.220 4.220 8 N -0.560 5.560 9 Si 0.930 3.070 10 H -0.212 1.212 11 H -0.197 1.197 12 H -0.195 1.195 13 C -0.123 4.123 14 C -0.142 4.142 15 C -0.153 4.153 16 C -0.156 4.156 17 C -0.153 4.153 18 H 0.093 0.907 19 H 0.055 0.945 20 H 0.040 0.960 21 H 0.076 0.924 22 H 0.071 0.929 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.979 4.420 7.400 8.844 hybrid contribution -0.054 -0.060 1.316 1.318 sum -2.032 4.360 8.716 9.955 Atomic orbital electron populations 1.22268 0.82474 1.00363 0.98994 1.87748 1.19755 1.31871 1.94827 1.19865 0.91882 0.80683 0.92843 0.96471 1.22615 1.40659 1.10273 0.93648 0.93549 1.27157 0.94017 0.96759 1.04074 1.70774 1.34947 1.15367 1.34867 0.83077 0.76636 0.74778 0.72551 1.21156 1.19710 1.19503 1.22140 0.99063 0.95996 0.95109 1.22178 0.99115 0.95925 0.96981 1.22515 1.01775 0.96755 0.94241 1.22346 0.98510 0.94823 0.99884 1.22123 0.99329 0.98271 0.95591 0.90724 0.94520 0.96022 0.92360 0.92910 0.93683 0.92578 0.90516 0.90393 0.89754 0.92396 0.91726 0.93589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.50 10.33 113.37 1.17 3.68 16 2 O -0.42 -22.16 8.61 -148.98 -1.28 -23.44 16 3 C 0.20 10.53 1.48 29.85 0.04 10.57 16 4 H 0.02 1.00 7.89 -2.39 -0.02 0.99 16 5 C -0.63 -35.47 6.76 25.60 0.17 -35.30 16 6 H 0.05 2.56 7.69 -2.91 -0.02 2.54 16 7 C -0.02 -1.07 5.40 84.65 0.46 -0.61 16 8 N -0.92 -57.74 13.53 21.45 0.29 -57.45 16 9 Si 1.11 50.56 29.90 68.60 2.05 52.61 16 10 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 13 C -0.10 -4.34 1.94 -10.07 -0.02 -4.36 16 14 C -0.10 -3.87 5.87 31.69 0.19 -3.69 16 15 C -0.12 -3.22 6.91 31.91 0.22 -3.00 16 16 C -0.12 -3.37 6.83 31.67 0.22 -3.15 16 17 C -0.12 -4.08 6.19 31.32 0.19 -3.89 16 18 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 19 H 0.04 1.47 6.61 -2.39 -0.02 1.46 16 20 H 0.02 1.06 7.08 -2.39 -0.02 1.04 16 21 H 0.27 17.17 6.47 -92.71 -0.60 16.57 16 22 H 0.05 2.24 6.91 -2.39 -0.02 2.22 16 23 H 0.04 1.84 7.78 -2.39 -0.02 1.82 16 24 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 27 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 30 H 0.05 1.81 7.28 -2.39 -0.02 1.79 16 Total: -1.00 -64.30 239.76 4.96 -59.34 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.26 Total: 8.69 kcal Atomic # 6 Polarization: -42.39 SS G_CDS: 2.64 Total: -39.75 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 0.29 Total: -57.45 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -1.28 Total: -23.44 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 2.05 Total: 52.61 kcal Total: -64.30 4.96 -59.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261119646.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.210 kcal (2) G-P(sol) polarization free energy of solvation -64.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds