Wall clock time and date at job start Mon Mar 30 2020 02:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47142 * 2 1 4 4 C 1.42902 * 113.99994 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.05478 * 29.95804 * 4 3 2 6 6 C 1.54273 * 110.02900 * 268.54483 * 4 3 2 7 7 C 1.54885 * 104.19251 * 217.10469 * 6 4 3 8 8 C 1.54892 * 102.75046 * 37.94548 * 7 6 4 9 9 H 1.09002 * 110.48580 * 80.73298 * 8 7 6 10 10 C 1.50704 * 110.48700 * 203.24620 * 8 7 6 11 11 H 1.08001 * 120.00134 * 116.75854 * 10 8 7 12 12 C 1.37882 * 119.99806 * 296.75764 * 10 8 7 13 13 N 1.31507 * 119.99801 * 359.97438 * 12 10 8 14 14 Si 1.86796 * 119.99760 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47120 * 89.99834 * 14 12 10 16 16 H 1.48493 * 109.47177 * 209.99758 * 14 12 10 17 17 H 1.48491 * 109.47463 * 330.00013 * 14 12 10 18 18 C 1.53869 * 110.03286 * 151.38044 * 4 3 2 19 19 H 1.08998 * 109.46960 * 60.00407 * 1 2 3 20 20 H 1.08993 * 109.46957 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47365 * 300.00231 * 1 2 3 22 22 H 1.08998 * 109.47365 * 239.99768 * 2 1 3 23 23 H 1.09000 * 109.47272 * 120.00034 * 2 1 3 24 24 H 1.08998 * 110.48282 * 98.43022 * 6 4 3 25 25 H 1.08998 * 110.59650 * 335.83782 * 6 4 3 26 26 H 1.08999 * 110.76189 * 279.63192 * 7 6 4 27 27 H 1.09002 * 110.75788 * 156.25768 * 7 6 4 28 28 H 0.97003 * 119.99704 * 180.02562 * 13 12 10 29 29 H 1.09003 * 110.03349 * 359.97438 * 18 4 3 30 30 H 1.08998 * 110.03555 * 238.56973 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8733 0.6054 -0.5122 6 6 3.9553 1.5383 1.4482 7 6 5.1352 2.5388 1.3715 8 6 4.6237 3.5936 0.3590 9 1 3.9556 4.3012 0.8501 10 6 5.7815 4.3182 -0.2780 11 1 5.9506 4.2362 -1.3415 12 6 6.6248 5.0858 0.4971 13 7 6.4185 5.1861 1.7920 14 14 8.0594 5.9845 -0.2926 15 1 7.6218 7.3386 -0.7174 16 1 9.1670 6.1075 0.6888 17 1 8.5297 5.2222 -1.4769 18 6 3.8559 2.7669 -0.6930 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 4.3050 0.5609 1.7805 25 1 3.1803 1.9129 2.1168 26 1 6.0339 2.0485 0.9974 27 1 5.3190 2.9947 2.3444 28 1 7.0115 5.7264 2.3372 29 1 2.9755 3.3148 -1.0290 30 1 4.5045 2.5464 -1.5407 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261164613.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:21 Heat of formation + Delta-G solvation = -72.363905 kcal Electronic energy + Delta-G solvation = -11384.822506 eV Core-core repulsion = 9372.154132 eV Total energy + Delta-G solvation = -2012.668373 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.29444 -35.56911 -32.31745 -30.72657 -28.11203 -26.71286 -23.74131 -22.56069 -19.65967 -19.04078 -16.65898 -16.11045 -15.20396 -14.54937 -14.25628 -13.42290 -12.95395 -12.50855 -12.30897 -12.02583 -11.57686 -11.21827 -10.98543 -10.69343 -10.58961 -10.54845 -10.16565 -9.75401 -9.50564 -9.17960 -8.85690 -8.72997 -8.31090 -5.95718 -3.98514 3.33697 3.40195 3.43349 4.17741 4.48151 5.19535 5.33493 5.36567 5.51513 5.63677 5.70985 5.76677 5.92851 6.04938 6.17813 6.31360 6.58619 6.66338 6.75751 6.89809 7.09274 7.25159 7.38107 7.76094 7.84848 7.94604 8.09935 8.50875 9.04321 9.65062 11.13756 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.097174 B = 0.008771 C = 0.008418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 288.074030 B = 3191.697921 C = 3325.465208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.385 6.385 4 C 0.085 3.915 5 H 0.048 0.952 6 C -0.150 4.150 7 C -0.098 4.098 8 C 0.049 3.951 9 H 0.032 0.968 10 C -0.513 4.513 11 H 0.055 0.945 12 C 0.061 3.939 13 N -0.890 5.890 14 Si 0.890 3.110 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.114 4.114 19 H 0.060 0.940 20 H 0.064 0.936 21 H 0.061 0.939 22 H 0.041 0.959 23 H 0.042 0.958 24 H 0.044 0.956 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.259 0.741 29 H 0.056 0.944 30 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.358 -8.538 -2.055 10.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.305 6.305 4 C 0.028 3.972 5 H 0.067 0.933 6 C -0.188 4.188 7 C -0.136 4.136 8 C 0.030 3.970 9 H 0.050 0.950 10 C -0.552 4.552 11 H 0.073 0.927 12 C -0.140 4.140 13 N -0.529 5.529 14 Si 0.718 3.282 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.151 4.151 19 H 0.079 0.921 20 H 0.083 0.917 21 H 0.080 0.920 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.403 -8.295 -1.897 10.649 hybrid contribution 1.018 0.203 -0.312 1.083 sum -5.385 -8.092 -2.209 9.968 Atomic orbital electron populations 1.21730 0.94471 1.01540 1.02946 1.22381 0.95027 0.85318 0.99394 1.87972 1.22569 1.24873 1.95062 1.23003 0.79015 0.98756 0.96404 0.93339 1.22984 1.00233 0.99429 0.96112 1.22384 0.94254 0.95178 1.01823 1.19427 0.94076 0.92356 0.91098 0.95029 1.21214 1.11184 1.28661 0.94095 0.92666 1.24987 0.97742 0.96429 0.94857 1.69966 1.38203 1.40165 1.04559 0.86635 0.82311 0.80186 0.79098 1.20732 1.21315 1.19970 1.22387 0.99243 0.94072 0.99444 0.92080 0.91740 0.91996 0.94100 0.93967 0.93712 0.91783 0.93377 0.91183 0.93125 0.92517 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.28 37.16 0.38 -1.37 16 2 C 0.06 0.80 6.50 37.16 0.24 1.04 16 3 O -0.38 -7.19 9.90 -35.23 -0.35 -7.54 16 4 C 0.09 1.67 3.38 -25.61 -0.09 1.58 16 5 H 0.05 0.87 7.82 -51.93 -0.41 0.46 16 6 C -0.15 -3.02 6.55 -25.07 -0.16 -3.18 16 7 C -0.10 -2.36 5.68 -24.74 -0.14 -2.50 16 8 C 0.05 1.26 2.75 -90.11 -0.25 1.02 16 9 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 10 C -0.51 -14.39 8.48 -34.44 -0.29 -14.69 16 11 H 0.06 1.52 7.57 -52.49 -0.40 1.12 16 12 C 0.06 1.73 5.34 -17.82 -0.10 1.63 16 13 N -0.89 -26.03 12.14 55.43 0.67 -25.36 16 14 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 18 C -0.11 -2.52 6.17 -25.62 -0.16 -2.68 16 19 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 20 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.04 0.54 8.10 -51.93 -0.42 0.12 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 1.30 8.08 -51.93 -0.42 0.89 16 26 H 0.05 1.17 8.05 -51.93 -0.42 0.75 16 27 H 0.07 1.82 7.45 -51.93 -0.39 1.43 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.06 1.24 7.95 -51.93 -0.41 0.83 16 30 H 0.06 1.31 7.68 -51.93 -0.40 0.91 16 LS Contribution 247.88 15.07 3.74 3.74 Total: -1.00 -29.18 247.88 -6.45 -35.64 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -4.93 Total: -3.85 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -0.56 Total: -19.15 kcal Atomic # 7 Polarization: -26.03 SS G_CDS: 0.67 Total: -25.36 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.35 Total: -7.54 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.18 -6.45 -35.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261164613.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.728 kcal (2) G-P(sol) polarization free energy of solvation -29.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds