Wall clock time and date at job start Mon Mar 30 2020 02:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47142 * 2 1 4 4 C 1.42902 * 113.99994 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.05478 * 29.95804 * 4 3 2 6 6 C 1.54273 * 110.02900 * 268.54483 * 4 3 2 7 7 C 1.54885 * 104.19251 * 217.10469 * 6 4 3 8 8 C 1.54892 * 102.75046 * 37.94548 * 7 6 4 9 9 H 1.09002 * 110.48580 * 80.73298 * 8 7 6 10 10 C 1.50704 * 110.48700 * 203.24620 * 8 7 6 11 11 H 1.08001 * 120.00134 * 116.75854 * 10 8 7 12 12 C 1.37882 * 119.99806 * 296.75764 * 10 8 7 13 13 N 1.31507 * 119.99801 * 359.97438 * 12 10 8 14 14 Si 1.86796 * 119.99760 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47120 * 89.99834 * 14 12 10 16 16 H 1.48493 * 109.47177 * 209.99758 * 14 12 10 17 17 H 1.48491 * 109.47463 * 330.00013 * 14 12 10 18 18 C 1.53869 * 110.03286 * 151.38044 * 4 3 2 19 19 H 1.08998 * 109.46960 * 60.00407 * 1 2 3 20 20 H 1.08993 * 109.46957 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47365 * 300.00231 * 1 2 3 22 22 H 1.08998 * 109.47365 * 239.99768 * 2 1 3 23 23 H 1.09000 * 109.47272 * 120.00034 * 2 1 3 24 24 H 1.08998 * 110.48282 * 98.43022 * 6 4 3 25 25 H 1.08998 * 110.59650 * 335.83782 * 6 4 3 26 26 H 1.08999 * 110.76189 * 279.63192 * 7 6 4 27 27 H 1.09002 * 110.75788 * 156.25768 * 7 6 4 28 28 H 0.97003 * 119.99704 * 180.02562 * 13 12 10 29 29 H 1.09003 * 110.03349 * 359.97438 * 18 4 3 30 30 H 1.08998 * 110.03555 * 238.56973 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8733 0.6054 -0.5122 6 6 3.9553 1.5383 1.4482 7 6 5.1352 2.5388 1.3715 8 6 4.6237 3.5936 0.3590 9 1 3.9556 4.3012 0.8501 10 6 5.7815 4.3182 -0.2780 11 1 5.9506 4.2362 -1.3415 12 6 6.6248 5.0858 0.4971 13 7 6.4185 5.1861 1.7920 14 14 8.0594 5.9845 -0.2926 15 1 7.6218 7.3386 -0.7174 16 1 9.1670 6.1075 0.6888 17 1 8.5297 5.2222 -1.4769 18 6 3.8559 2.7669 -0.6930 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 4.3050 0.5609 1.7805 25 1 3.1803 1.9129 2.1168 26 1 6.0339 2.0485 0.9974 27 1 5.3190 2.9947 2.3444 28 1 7.0115 5.7264 2.3372 29 1 2.9755 3.3148 -1.0290 30 1 4.5045 2.5464 -1.5407 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261164613.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:21 Heat of formation + Delta-G solvation = -89.689744 kcal Electronic energy + Delta-G solvation = -11385.573810 eV Core-core repulsion = 9372.154132 eV Total energy + Delta-G solvation = -2013.419678 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.84115 -37.22656 -34.33086 -31.92033 -29.98894 -28.49094 -25.75597 -23.62517 -21.39902 -20.88661 -18.59435 -17.70785 -16.64575 -16.33928 -15.83531 -15.15846 -14.47976 -14.18890 -13.80270 -13.25919 -13.22930 -12.94673 -12.71575 -12.43833 -12.33079 -11.93222 -11.88744 -11.47366 -11.41293 -11.05109 -10.82098 -10.45878 -10.31412 -8.11059 -6.21792 1.42469 1.42675 1.53483 2.44290 2.87901 3.19290 3.93186 3.99443 4.24106 4.27668 4.41842 4.54793 4.58265 4.75937 4.87603 4.97004 5.00015 5.08782 5.18458 5.21828 5.30812 5.37851 5.46013 5.64740 5.90239 5.98520 6.35873 6.49747 6.89152 7.45686 8.97954 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.097174 B = 0.008771 C = 0.008418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 288.074030 B = 3191.697921 C = 3325.465208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.405 6.405 4 C 0.095 3.905 5 H 0.074 0.926 6 C -0.139 4.139 7 C -0.092 4.092 8 C 0.038 3.962 9 H -0.007 1.007 10 C -0.534 4.534 11 H 0.056 0.944 12 C 0.010 3.990 13 N -0.921 5.921 14 Si 0.957 3.043 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.265 1.265 18 C -0.109 4.109 19 H 0.057 0.943 20 H 0.094 0.906 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.260 0.740 29 H 0.051 0.949 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.402 -9.929 -2.911 12.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.326 6.326 4 C 0.037 3.963 5 H 0.092 0.908 6 C -0.176 4.176 7 C -0.130 4.130 8 C 0.020 3.980 9 H 0.011 0.989 10 C -0.572 4.572 11 H 0.074 0.926 12 C -0.189 4.189 13 N -0.561 5.561 14 Si 0.783 3.217 15 H -0.202 1.202 16 H -0.209 1.209 17 H -0.190 1.190 18 C -0.147 4.147 19 H 0.076 0.924 20 H 0.113 0.887 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.093 0.907 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.462 -9.699 -2.762 11.977 hybrid contribution 0.969 0.628 -0.034 1.155 sum -5.493 -9.071 -2.796 10.967 Atomic orbital electron populations 1.21754 0.92704 1.03392 1.02513 1.22727 0.96541 0.83315 1.00598 1.87946 1.21575 1.27922 1.95132 1.22764 0.80117 0.97948 0.95441 0.90805 1.22876 0.98247 0.99600 0.96922 1.22171 0.95652 0.95598 0.99583 1.19416 0.93443 0.92625 0.92528 0.98900 1.21585 1.12024 1.29281 0.94303 0.92606 1.25818 1.00475 0.97257 0.95348 1.70103 1.39259 1.40835 1.05874 0.85568 0.78872 0.78911 0.78390 1.20246 1.20865 1.18964 1.22252 0.98664 0.95118 0.98631 0.92353 0.88736 0.92633 0.92560 0.92995 0.90664 0.92410 0.93921 0.94045 0.93073 0.92979 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 10.28 71.98 0.74 -2.29 16 2 C 0.04 1.13 6.50 71.98 0.47 1.60 16 3 O -0.41 -14.35 9.90 -148.98 -1.47 -15.83 16 4 C 0.09 3.52 3.38 31.32 0.11 3.63 16 5 H 0.07 2.39 7.82 -2.39 -0.02 2.38 16 6 C -0.14 -5.40 6.55 31.67 0.21 -5.20 16 7 C -0.09 -4.46 5.68 31.88 0.18 -4.28 16 8 C 0.04 2.03 2.75 -10.46 -0.03 2.00 16 9 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 10 C -0.53 -30.33 8.48 25.60 0.22 -30.11 16 11 H 0.06 3.08 7.57 -2.91 -0.02 3.06 16 12 C 0.01 0.54 5.34 84.66 0.45 0.99 16 13 N -0.92 -55.01 12.14 21.45 0.26 -54.75 16 14 Si 0.96 44.31 29.54 68.60 2.03 46.34 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 16 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 18 C -0.11 -4.79 6.17 31.32 0.19 -4.59 16 19 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 20 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 23 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.06 2.31 8.08 -2.39 -0.02 2.29 16 26 H 0.04 2.07 8.05 -2.39 -0.02 2.05 16 27 H 0.04 2.21 7.45 -2.39 -0.02 2.19 16 28 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 29 H 0.05 2.28 7.95 -2.39 -0.02 2.26 16 30 H 0.07 2.78 7.68 -2.39 -0.02 2.76 16 Total: -1.00 -62.75 247.88 4.43 -58.32 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: 1.08 Total: 4.16 kcal Atomic # 6 Polarization: -40.78 SS G_CDS: 2.54 Total: -38.24 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.26 Total: -54.75 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -1.47 Total: -15.83 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -62.75 4.43 -58.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261164613.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.370 kcal (2) G-P(sol) polarization free energy of solvation -62.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds