Wall clock time and date at job start Mon Mar 30 2020 02:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00081 * 2 1 4 4 C 1.53002 * 109.47313 * 180.02562 * 3 2 1 5 5 C 1.50695 * 110.05743 * 53.52001 * 4 3 2 6 6 H 1.08002 * 120.00248 * 238.40844 * 5 4 3 7 7 C 1.37881 * 119.99942 * 58.41203 * 5 4 3 8 8 N 1.31517 * 119.99759 * 6.20599 * 7 5 4 9 9 Si 1.86795 * 120.00124 * 186.21331 * 7 5 4 10 10 H 1.48497 * 109.47430 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47596 * 119.99908 * 9 7 5 12 12 H 1.48505 * 109.46883 * 239.99572 * 9 7 5 13 13 C 1.54261 * 110.03340 * 174.94250 * 4 3 2 14 14 C 1.54885 * 104.19600 * 142.89108 * 13 4 3 15 15 C 1.54891 * 102.74879 * 322.05583 * 14 13 4 16 16 C 1.53881 * 110.02814 * 292.10882 * 4 3 2 17 17 H 1.08997 * 109.47229 * 60.00682 * 1 2 3 18 18 H 1.09002 * 109.47479 * 180.02562 * 1 2 3 19 19 H 1.09000 * 109.47330 * 300.00062 * 1 2 3 20 20 H 1.08993 * 109.47432 * 59.99622 * 3 2 1 21 21 H 1.09005 * 109.46625 * 299.99345 * 3 2 1 22 22 H 0.97004 * 119.99762 * 179.97438 * 8 7 5 23 23 H 1.08998 * 110.48522 * 24.21237 * 13 4 3 24 24 H 1.09002 * 110.48849 * 261.56906 * 13 4 3 25 25 H 1.08997 * 110.75950 * 80.37143 * 14 13 4 26 26 H 1.09000 * 110.75892 * 203.74298 * 14 13 4 27 27 H 1.09006 * 110.48261 * 156.62039 * 15 14 13 28 28 H 1.08998 * 110.48857 * 279.26016 * 15 14 13 29 29 H 1.08993 * 110.03015 * 121.42986 * 16 4 3 30 30 H 1.09003 * 110.02911 * 359.97438 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 3.9837 0.3051 -1.1392 6 1 4.5608 -0.5856 -0.9387 7 6 3.6573 0.6374 -2.4369 8 7 3.0619 1.7818 -2.6927 9 14 4.0606 -0.5379 -3.8317 10 1 4.7252 -1.7473 -3.2834 11 1 2.8078 -0.9323 -4.5247 12 1 4.9698 0.1319 -4.7961 13 6 4.1761 2.5821 -0.1284 14 6 5.4298 2.5095 0.7782 15 6 4.9357 1.6633 1.9777 16 6 4.0184 0.6004 1.3385 17 1 -0.3633 0.5137 -0.8900 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3634 0.5138 0.8900 20 1 1.6886 1.8464 0.8899 21 1 1.6886 1.8463 -0.8901 22 1 2.8326 2.0158 -3.6057 23 1 3.4906 3.3502 0.2294 24 1 4.4633 2.7771 -1.1617 25 1 6.2500 2.0086 0.2639 26 1 5.7284 3.5055 1.1051 27 1 5.7773 1.1877 2.4814 28 1 4.3729 2.2830 2.6757 29 1 4.5770 -0.3193 1.1648 30 1 3.1661 0.4033 1.9889 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261330110.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:39 Heat of formation + Delta-G solvation = -78.217224 kcal Electronic energy + Delta-G solvation = -11998.339114 eV Core-core repulsion = 9985.416922 eV Total energy + Delta-G solvation = -2012.922192 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.65507 -37.54002 -34.40753 -30.95670 -29.15026 -27.60561 -26.50802 -24.53235 -21.30714 -20.23895 -18.04852 -16.82678 -16.72243 -16.23212 -16.01980 -15.54004 -14.75925 -14.01816 -13.86047 -13.32516 -12.99139 -12.81852 -12.28516 -12.18095 -12.03059 -11.68778 -11.59012 -11.40157 -11.15121 -10.94143 -10.62575 -10.35262 -10.09177 -7.97518 -6.04289 1.39756 1.43303 1.52952 2.49720 3.28571 3.34955 4.18191 4.25465 4.29436 4.51456 4.61507 4.69577 4.82865 4.87870 4.99502 5.04030 5.08478 5.18960 5.21168 5.39087 5.48777 5.59145 5.73441 5.76963 5.92269 6.15190 6.52561 6.75747 6.98720 7.59042 9.05118 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.030165 B = 0.020309 C = 0.014581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.020150 B = 1378.342899 C = 1919.786628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.401 6.401 3 C 0.087 3.913 4 C 0.056 3.944 5 C -0.491 4.491 6 H 0.039 0.961 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.937 3.063 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.282 1.282 13 C -0.095 4.095 14 C -0.115 4.115 15 C -0.114 4.114 16 C -0.107 4.107 17 H 0.024 0.976 18 H 0.093 0.907 19 H 0.045 0.955 20 H 0.018 0.982 21 H 0.042 0.958 22 H 0.255 0.745 23 H 0.032 0.968 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.040 0.960 30 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.774 0.400 5.947 6.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C 0.011 3.989 4 C 0.056 3.944 5 C -0.529 4.529 6 H 0.057 0.943 7 C -0.176 4.176 8 N -0.551 5.551 9 Si 0.765 3.235 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.208 1.208 13 C -0.133 4.133 14 C -0.152 4.152 15 C -0.151 4.151 16 C -0.145 4.145 17 H 0.043 0.957 18 H 0.111 0.889 19 H 0.064 0.936 20 H 0.036 0.964 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.727 0.321 5.794 5.848 hybrid contribution -0.297 -0.374 -1.174 1.267 sum -1.024 -0.053 4.620 4.733 Atomic orbital electron populations 1.22764 0.82104 1.02676 0.99326 1.87906 1.19115 1.29764 1.95169 1.22580 0.96561 0.82817 0.96990 1.18897 0.89506 0.93455 0.92572 1.21297 1.32444 1.07637 0.91512 0.94269 1.25450 0.95662 0.96146 1.00367 1.70008 1.43442 1.22014 1.19592 0.85822 0.77478 0.79983 0.80209 1.19895 1.21321 1.20837 1.22145 0.95851 0.96145 0.99173 1.22401 0.97405 0.99261 0.96175 1.22318 0.98734 0.97090 0.96987 1.22193 0.97967 0.97941 0.96358 0.95707 0.88898 0.93612 0.96435 0.94015 0.93580 0.94893 0.92929 0.93037 0.91058 0.91183 0.91266 0.94102 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 11.01 113.37 1.25 2.28 16 2 O -0.40 -19.24 9.99 -148.98 -1.49 -20.73 16 3 C 0.09 4.25 4.14 71.98 0.30 4.54 16 4 C 0.06 2.76 0.44 -52.20 -0.02 2.74 16 5 C -0.49 -27.28 7.48 25.60 0.19 -27.09 16 6 H 0.04 2.24 7.33 -2.91 -0.02 2.21 16 7 C 0.02 1.20 4.97 84.66 0.42 1.62 16 8 N -0.91 -51.63 9.98 21.45 0.21 -51.42 16 9 Si 0.94 45.04 29.54 68.60 2.03 47.07 16 10 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 13 C -0.09 -4.41 5.43 31.67 0.17 -4.24 16 14 C -0.11 -4.37 6.91 31.88 0.22 -4.15 16 15 C -0.11 -3.98 6.83 31.67 0.22 -3.76 16 16 C -0.11 -4.57 5.97 31.32 0.19 -4.38 16 17 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 18 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 19 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 20 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 21 H 0.04 2.26 6.44 -2.38 -0.02 2.24 16 22 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 23 H 0.03 1.45 7.85 -2.39 -0.02 1.44 16 24 H 0.05 2.78 6.34 -2.39 -0.02 2.76 16 25 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 28 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.04 1.81 7.37 -2.39 -0.02 1.79 16 30 H 0.05 1.90 7.64 -2.39 -0.02 1.88 16 Total: -1.00 -60.11 240.41 4.77 -55.33 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: 1.09 Total: 2.19 kcal Atomic # 6 Polarization: -35.37 SS G_CDS: 2.93 Total: -32.44 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: 0.21 Total: -51.42 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -1.49 Total: -20.73 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -60.11 4.77 -55.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261330110.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.883 kcal (2) G-P(sol) polarization free energy of solvation -60.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds