Wall clock time and date at job start Mon Mar 30 2020 02:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.64515 * 2 1 4 4 C 1.54936 * 110.72697 * 236.84854 * 2 1 3 5 5 N 1.48526 * 103.22896 * 204.23004 * 4 2 1 6 6 C 1.46906 * 111.00129 * 159.71948 * 5 4 2 7 7 C 1.50701 * 109.46965 * 169.99985 * 6 5 4 8 8 H 1.08005 * 120.00268 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99915 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99666 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00290 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47128 * 89.99741 * 11 9 7 13 13 H 1.48501 * 109.47251 * 209.99489 * 11 9 7 14 14 H 1.48497 * 109.47002 * 329.99797 * 11 9 7 15 15 C 1.47902 * 105.82187 * 39.20588 * 5 4 2 16 16 C 1.53992 * 107.05623 * 334.67257 * 15 5 4 17 17 H 1.08997 * 110.30877 * 120.14028 * 16 15 5 18 18 N 1.46901 * 110.39137 * 242.26233 * 16 15 5 19 19 H 1.08994 * 109.47272 * 181.69492 * 1 2 3 20 20 H 1.09004 * 109.47400 * 301.69768 * 1 2 3 21 21 H 1.09006 * 109.46903 * 61.69987 * 1 2 3 22 22 H 1.09002 * 110.66527 * 85.79118 * 4 2 1 23 23 H 1.09006 * 110.80668 * 322.73265 * 4 2 1 24 24 H 1.08993 * 109.47164 * 289.99928 * 6 5 4 25 25 H 1.08996 * 109.46920 * 49.99963 * 6 5 4 26 26 H 0.97001 * 119.99343 * 180.02562 * 10 9 7 27 27 H 1.09002 * 109.91604 * 94.02060 * 15 5 4 28 28 H 1.09002 * 109.92109 * 215.31569 * 15 5 4 29 29 H 1.00902 * 111.00004 * 295.76792 * 18 16 15 30 30 H 1.00908 * 110.99770 * 59.71681 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0783 -0.7924 -1.2132 5 7 3.4317 -1.2079 -0.7642 6 6 3.9212 -2.3472 -1.5520 7 6 5.3769 -2.5836 -1.2423 8 1 5.8877 -1.9506 -0.5317 9 6 6.0572 -3.6074 -1.8670 10 7 5.4353 -4.3779 -2.7327 11 14 7.8615 -3.9010 -1.4827 12 1 7.9775 -4.8504 -0.3466 13 1 8.5352 -4.4727 -2.6762 14 1 8.5061 -2.6135 -1.1196 15 6 3.2893 -1.5720 0.6622 16 6 2.0770 -0.7949 1.2079 17 1 1.3207 -1.4861 1.5797 18 7 2.4959 0.1235 2.2751 19 1 -0.3633 -1.0271 0.0304 20 1 -0.3634 0.5400 0.8744 21 1 -0.3633 0.4872 -0.9049 22 1 2.1444 -0.1521 -2.0928 23 1 1.4569 -1.6640 -1.4193 24 1 3.3465 -3.2379 -1.2984 25 1 3.8061 -2.1307 -2.6140 26 1 5.9138 -5.0983 -3.1718 27 1 3.1160 -2.6441 0.7562 28 1 4.1886 -1.2892 1.2093 29 1 2.8550 -0.3848 3.0693 30 1 3.1743 0.7883 1.9344 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300050290.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:29 Heat of formation + Delta-G solvation = -6.299357 kcal Electronic energy + Delta-G solvation = -11469.093027 eV Core-core repulsion = 9491.582179 eV Total energy + Delta-G solvation = -1977.510848 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.69518 -34.01937 -32.38122 -31.63377 -27.59771 -26.50925 -24.51600 -22.08090 -20.25090 -19.58810 -16.23291 -15.63775 -15.34487 -14.76673 -14.09606 -13.55634 -13.23988 -12.76319 -12.46308 -12.02217 -11.72490 -11.49490 -11.12317 -10.82521 -10.73095 -10.51579 -10.44428 -10.23165 -9.83885 -9.19826 -8.48942 -8.35813 -7.35799 -6.04026 -4.05585 3.30111 3.36225 3.40882 4.41415 4.80181 4.88591 5.08025 5.26172 5.33396 5.48875 5.71201 5.84028 5.88793 6.00546 6.13318 6.32427 6.35985 6.46689 6.55129 6.64261 7.14545 7.27734 7.39125 7.64996 7.77891 8.00859 8.16564 8.50274 9.02044 9.58765 11.06913 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.065122 B = 0.009990 C = 0.009018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.861925 B = 2802.231034 C = 3104.041524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 H 0.081 0.919 4 C 0.035 3.965 5 N -0.514 5.514 6 C 0.184 3.816 7 C -0.506 4.506 8 H 0.061 0.939 9 C 0.054 3.946 10 N -0.899 5.899 11 Si 0.898 3.102 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.273 1.273 15 C 0.018 3.982 16 C 0.080 3.920 17 H 0.078 0.922 18 N -0.841 5.841 19 H 0.050 0.950 20 H 0.056 0.944 21 H 0.052 0.948 22 H 0.072 0.928 23 H 0.036 0.964 24 H -0.007 1.007 25 H 0.030 0.970 26 H 0.261 0.739 27 H 0.041 0.959 28 H 0.067 0.933 29 H 0.336 0.664 30 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.545 6.183 6.089 10.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 H 0.099 0.901 4 C -0.094 4.094 5 N -0.238 5.238 6 C 0.058 3.942 7 C -0.544 4.544 8 H 0.079 0.921 9 C -0.147 4.147 10 N -0.539 5.539 11 Si 0.726 3.274 12 H -0.208 1.208 13 H -0.212 1.212 14 H -0.198 1.198 15 C -0.113 4.113 16 C -0.032 4.032 17 H 0.096 0.904 18 N -0.369 5.369 19 H 0.069 0.931 20 H 0.075 0.925 21 H 0.071 0.929 22 H 0.090 0.910 23 H 0.054 0.946 24 H 0.011 0.989 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.148 0.852 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.893 6.666 5.908 11.263 hybrid contribution 1.449 -1.511 -0.015 2.093 sum -5.444 5.155 5.893 9.536 Atomic orbital electron populations 1.21717 0.95018 1.01410 1.01340 1.22074 0.94969 0.99630 0.93986 0.90107 1.23259 0.91107 0.97868 0.97143 1.64818 1.19732 1.37714 1.01556 1.19906 0.95495 0.85543 0.93250 1.21128 0.94933 1.13951 1.24429 0.92102 1.25008 0.98581 0.95964 0.95179 1.69964 1.36622 1.19265 1.28034 0.86489 0.84792 0.78371 0.77718 1.20767 1.21178 1.19790 1.23562 0.97166 0.98432 0.92124 1.22486 0.96215 0.93245 0.91287 0.90361 1.59014 1.48239 1.20148 1.09514 0.93070 0.92505 0.92879 0.90952 0.94577 0.98925 0.95236 0.92917 0.94083 0.91478 0.85165 0.84514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.16 37.16 0.34 -1.42 16 2 C -0.09 -1.34 3.35 -88.76 -0.30 -1.63 16 3 H 0.08 1.24 7.96 -51.93 -0.41 0.83 16 4 C 0.03 0.65 5.96 -1.90 -0.01 0.64 16 5 N -0.51 -11.42 5.24 -231.89 -1.21 -12.63 16 6 C 0.18 4.93 4.55 -4.97 -0.02 4.91 16 7 C -0.51 -14.57 8.90 -34.44 -0.31 -14.88 16 8 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 9 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 11 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.02 0.35 6.04 -2.75 -0.02 0.33 16 16 C 0.08 1.25 3.70 -66.36 -0.25 1.00 16 17 H 0.08 1.19 7.82 -51.93 -0.41 0.79 16 18 N -0.84 -11.37 9.17 -3.52 -0.03 -11.41 16 19 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 23 H 0.04 0.68 7.93 -51.93 -0.41 0.27 16 24 H -0.01 -0.20 7.73 -51.93 -0.40 -0.60 16 25 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.04 0.87 7.52 -51.93 -0.39 0.48 16 28 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 29 H 0.34 4.06 9.08 -39.29 -0.36 3.70 16 30 H 0.34 4.59 8.89 -39.29 -0.35 4.24 16 LS Contribution 247.27 15.07 3.73 3.73 Total: -1.00 -30.12 247.27 -7.26 -37.37 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -4.79 Total: 2.00 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -0.66 Total: -9.60 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.51 Total: -50.42 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.12 -7.26 -37.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300050290.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.072 kcal (2) G-P(sol) polarization free energy of solvation -30.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds