Wall clock time and date at job start Mon Mar 30 2020 02:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.64515 * 2 1 4 4 C 1.54936 * 110.72697 * 236.84854 * 2 1 3 5 5 N 1.48526 * 103.22896 * 204.23004 * 4 2 1 6 6 C 1.46906 * 111.00129 * 159.71948 * 5 4 2 7 7 C 1.50701 * 109.46965 * 169.99985 * 6 5 4 8 8 H 1.08005 * 120.00268 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99915 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99666 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00290 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47128 * 89.99741 * 11 9 7 13 13 H 1.48501 * 109.47251 * 209.99489 * 11 9 7 14 14 H 1.48497 * 109.47002 * 329.99797 * 11 9 7 15 15 C 1.47902 * 105.82187 * 39.20588 * 5 4 2 16 16 C 1.53992 * 107.05623 * 334.67257 * 15 5 4 17 17 H 1.08997 * 110.30877 * 120.14028 * 16 15 5 18 18 N 1.46901 * 110.39137 * 242.26233 * 16 15 5 19 19 H 1.08994 * 109.47272 * 181.69492 * 1 2 3 20 20 H 1.09004 * 109.47400 * 301.69768 * 1 2 3 21 21 H 1.09006 * 109.46903 * 61.69987 * 1 2 3 22 22 H 1.09002 * 110.66527 * 85.79118 * 4 2 1 23 23 H 1.09006 * 110.80668 * 322.73265 * 4 2 1 24 24 H 1.08993 * 109.47164 * 289.99928 * 6 5 4 25 25 H 1.08996 * 109.46920 * 49.99963 * 6 5 4 26 26 H 0.97001 * 119.99343 * 180.02562 * 10 9 7 27 27 H 1.09002 * 109.91604 * 94.02060 * 15 5 4 28 28 H 1.09002 * 109.92109 * 215.31569 * 15 5 4 29 29 H 1.00902 * 111.00004 * 295.76792 * 18 16 15 30 30 H 1.00908 * 110.99770 * 59.71681 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0783 -0.7924 -1.2132 5 7 3.4317 -1.2079 -0.7642 6 6 3.9212 -2.3472 -1.5520 7 6 5.3769 -2.5836 -1.2423 8 1 5.8877 -1.9506 -0.5317 9 6 6.0572 -3.6074 -1.8670 10 7 5.4353 -4.3779 -2.7327 11 14 7.8615 -3.9010 -1.4827 12 1 7.9775 -4.8504 -0.3466 13 1 8.5352 -4.4727 -2.6762 14 1 8.5061 -2.6135 -1.1196 15 6 3.2893 -1.5720 0.6622 16 6 2.0770 -0.7949 1.2079 17 1 1.3207 -1.4861 1.5797 18 7 2.4959 0.1235 2.2751 19 1 -0.3633 -1.0271 0.0304 20 1 -0.3634 0.5400 0.8744 21 1 -0.3633 0.4872 -0.9049 22 1 2.1444 -0.1521 -2.0928 23 1 1.4569 -1.6640 -1.4193 24 1 3.3465 -3.2379 -1.2984 25 1 3.8061 -2.1307 -2.6140 26 1 5.9138 -5.0983 -3.1718 27 1 3.1160 -2.6441 0.7562 28 1 4.1886 -1.2892 1.2093 29 1 2.8550 -0.3848 3.0693 30 1 3.1743 0.7883 1.9344 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300050290.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:28 Heat of formation + Delta-G solvation = -29.622019 kcal Electronic energy + Delta-G solvation = -11470.104373 eV Core-core repulsion = 9491.582179 eV Total energy + Delta-G solvation = -1978.522195 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.19882 -35.81189 -34.20883 -33.00635 -29.47506 -28.01500 -26.15598 -23.86154 -21.86715 -21.00150 -18.44914 -16.99860 -16.89622 -16.43939 -15.76677 -15.13868 -14.88221 -14.27235 -13.96056 -13.50858 -13.34744 -13.11300 -12.97610 -12.57538 -12.43207 -12.19564 -11.91593 -11.70606 -11.52262 -11.24151 -10.67258 -9.62785 -9.18857 -8.25952 -6.37308 1.36914 1.38860 1.50762 2.36103 3.05847 3.33226 3.56753 3.72894 3.90817 4.19981 4.33879 4.47871 4.66789 4.73369 4.78728 4.91110 4.98749 5.03001 5.11835 5.17503 5.31175 5.44253 5.59143 5.96388 6.18721 6.22463 6.46157 6.61724 6.77999 7.32914 8.85290 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.065122 B = 0.009990 C = 0.009018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.861925 B = 2802.231034 C = 3104.041524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 H 0.086 0.914 4 C 0.030 3.970 5 N -0.525 5.525 6 C 0.199 3.801 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.000 4.000 10 N -0.934 5.934 11 Si 0.973 3.027 12 H -0.272 1.272 13 H -0.279 1.279 14 H -0.265 1.265 15 C 0.018 3.982 16 C 0.093 3.907 17 H 0.088 0.912 18 N -0.830 5.830 19 H 0.050 0.950 20 H 0.071 0.929 21 H 0.065 0.935 22 H 0.075 0.925 23 H 0.029 0.971 24 H -0.037 1.037 25 H 0.002 0.998 26 H 0.266 0.734 27 H 0.017 0.983 28 H 0.063 0.937 29 H 0.347 0.653 30 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.459 7.151 7.267 12.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.096 4.096 3 H 0.105 0.895 4 C -0.098 4.098 5 N -0.249 5.249 6 C 0.073 3.927 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.198 4.198 10 N -0.574 5.574 11 Si 0.797 3.203 12 H -0.197 1.197 13 H -0.204 1.204 14 H -0.189 1.189 15 C -0.113 4.113 16 C -0.020 4.020 17 H 0.106 0.894 18 N -0.359 5.359 19 H 0.069 0.931 20 H 0.090 0.910 21 H 0.084 0.916 22 H 0.094 0.906 23 H 0.048 0.952 24 H -0.019 1.019 25 H 0.020 0.980 26 H 0.075 0.925 27 H 0.035 0.965 28 H 0.082 0.918 29 H 0.160 0.840 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.821 7.654 7.108 12.475 hybrid contribution 1.389 -1.797 -0.390 2.305 sum -5.431 5.857 6.718 10.437 Atomic orbital electron populations 1.21675 0.92594 1.01873 1.02712 1.22037 0.96836 0.98992 0.91709 0.89550 1.23382 0.89293 0.98113 0.99027 1.64706 1.22324 1.35303 1.02617 1.19549 0.94877 0.86004 0.92311 1.21417 0.95944 1.14393 1.24708 0.92319 1.25979 1.03707 0.95439 0.94714 1.70090 1.38730 1.19764 1.28862 0.85332 0.78494 0.78609 0.77881 1.19696 1.20403 1.18925 1.23650 0.99173 0.97742 0.90707 1.22365 0.94432 0.93275 0.91916 0.89412 1.59007 1.48463 1.19475 1.08944 0.93097 0.91049 0.91607 0.90632 0.95236 1.01915 0.98030 0.92547 0.96456 0.91839 0.83980 0.84163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.16 71.98 0.66 -2.32 16 2 C -0.08 -2.19 3.35 -9.59 -0.03 -2.22 16 3 H 0.09 2.42 7.96 -2.39 -0.02 2.40 16 4 C 0.03 1.11 5.96 86.65 0.52 1.63 16 5 N -0.53 -23.72 5.24 -887.57 -4.65 -28.36 16 6 C 0.20 11.13 4.55 85.56 0.39 11.52 16 7 C -0.53 -30.95 8.90 25.60 0.23 -30.72 16 8 H 0.06 3.40 7.81 -2.91 -0.02 3.37 16 9 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 10 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 11 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 14 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 15 C 0.02 0.70 6.04 86.45 0.52 1.22 16 16 C 0.09 2.74 3.70 45.79 0.17 2.91 16 17 H 0.09 2.48 7.82 -2.39 -0.02 2.46 16 18 N -0.83 -20.31 9.17 -165.04 -1.51 -21.82 16 19 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 20 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 21 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 22 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 23 H 0.03 1.12 7.93 -2.38 -0.02 1.10 16 24 H -0.04 -2.22 7.73 -2.39 -0.02 -2.24 16 25 H 0.00 0.09 8.08 -2.39 -0.02 0.08 16 26 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 27 H 0.02 0.74 7.52 -2.39 -0.02 0.73 16 28 H 0.06 2.49 7.93 -2.39 -0.02 2.47 16 29 H 0.35 7.49 9.08 -89.69 -0.81 6.68 16 30 H 0.35 8.38 8.89 -89.69 -0.80 7.58 16 Total: -1.00 -64.93 247.27 -1.43 -66.36 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -0.49 Total: 11.41 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 2.91 Total: -17.53 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -5.88 Total: -107.27 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.93 -1.43 -66.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300050290.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.735 kcal (2) G-P(sol) polarization free energy of solvation -64.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds