Wall clock time and date at job start Mon Mar 30 2020 02:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.45856 * 2 1 4 4 C 1.54387 * 110.40957 * 237.59232 * 2 1 3 5 5 H 1.08990 * 110.32427 * 98.36871 * 4 2 1 6 6 N 1.46900 * 110.32032 * 336.26334 * 4 2 1 7 7 C 1.54255 * 105.05670 * 217.36902 * 4 2 1 8 8 C 1.54383 * 105.06278 * 0.02562 * 7 4 2 9 9 N 1.48553 * 104.59483 * 23.84951 * 8 7 4 10 10 C 1.46899 * 111.00117 * 200.96181 * 9 8 7 11 11 C 1.50703 * 109.47107 * 285.42230 * 10 9 8 12 12 H 1.07996 * 119.99751 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00094 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99955 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47171 * 89.99544 * 15 13 11 17 17 H 1.48500 * 109.46632 * 209.99795 * 15 13 11 18 18 H 1.48494 * 109.47053 * 329.99231 * 15 13 11 19 19 H 1.08998 * 109.47484 * 299.04006 * 1 2 3 20 20 H 1.09005 * 109.47232 * 59.03442 * 1 2 3 21 21 H 1.09004 * 109.47839 * 179.03288 * 1 2 3 22 22 H 1.00907 * 110.99708 * 179.97438 * 6 4 2 23 23 H 1.00898 * 111.00597 * 303.95269 * 6 4 2 24 24 H 1.09004 * 110.32293 * 118.89780 * 7 4 2 25 25 H 1.09002 * 110.32538 * 241.10329 * 7 4 2 26 26 H 1.09003 * 110.40424 * 265.07051 * 8 7 4 27 27 H 1.08993 * 110.41069 * 142.63520 * 8 7 4 28 28 H 1.09002 * 109.47043 * 45.42210 * 10 9 8 29 29 H 1.09001 * 109.47354 * 165.42272 * 10 9 8 30 30 H 0.97000 * 120.00333 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0684 -0.7755 -1.2216 5 1 2.3398 -0.0841 -2.0193 6 7 1.0644 -1.7356 -1.6993 7 6 3.3177 -1.5188 -0.7056 8 6 3.4286 -1.1305 0.7845 9 7 2.0476 -0.7472 1.1753 10 6 2.0560 0.0999 2.3754 11 6 2.3493 -0.7476 3.5865 12 1 2.5127 -1.8094 3.4758 13 6 2.4080 -0.1676 4.8360 14 7 2.2086 1.1253 4.9708 15 14 2.7723 -1.2180 6.3371 16 1 4.2392 -1.2661 6.5635 17 1 2.1068 -0.6289 7.5267 18 1 2.2604 -2.5940 6.1144 19 1 -0.3634 0.4988 0.8984 20 1 -0.3634 0.5288 -0.8812 21 1 -0.3635 -1.0275 -0.0173 22 1 1.4059 -2.2482 -2.4986 23 1 0.7832 -2.3625 -0.9605 24 1 3.1860 -2.5961 -0.8069 25 1 4.2041 -1.1922 -1.2493 26 1 4.1068 -0.2860 0.9077 27 1 3.7686 -1.9813 1.3748 28 1 2.8242 0.8665 2.2736 29 1 1.0819 0.5750 2.4917 30 1 2.2495 1.5334 5.8499 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306416537.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:11 Heat of formation + Delta-G solvation = -0.303768 kcal Electronic energy + Delta-G solvation = -11625.381569 eV Core-core repulsion = 9648.130709 eV Total energy + Delta-G solvation = -1977.250860 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.73085 -33.90044 -32.22028 -30.80072 -28.86619 -25.82889 -24.47927 -22.33417 -20.17862 -18.89554 -16.58697 -15.96623 -14.85320 -14.56028 -13.93408 -13.85304 -13.11767 -12.69248 -12.10996 -11.94496 -11.76977 -11.15618 -11.01423 -10.94160 -10.53616 -10.33907 -10.27838 -10.18614 -9.72798 -9.16925 -8.40960 -8.39848 -7.37771 -6.00720 -4.01840 3.32421 3.38466 3.43156 4.44055 4.83208 4.94880 5.17288 5.26412 5.35342 5.57510 5.77957 5.96836 6.05206 6.16003 6.19597 6.44121 6.55952 6.60003 6.68961 6.96447 7.22222 7.31735 7.43930 7.73120 7.81583 8.04078 8.20042 8.54090 9.05877 9.62169 11.10263 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.062982 B = 0.010640 C = 0.009967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.461838 B = 2630.959882 C = 2808.732387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.057 3.943 3 H 0.042 0.958 4 C 0.092 3.908 5 H 0.075 0.925 6 N -0.836 5.836 7 C -0.161 4.161 8 C 0.046 3.954 9 N -0.503 5.503 10 C 0.183 3.817 11 C -0.504 4.504 12 H 0.061 0.939 13 C 0.054 3.946 14 N -0.899 5.899 15 Si 0.898 3.102 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.273 1.273 19 H 0.047 0.953 20 H 0.047 0.953 21 H 0.063 0.937 22 H 0.330 0.670 23 H 0.348 0.652 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.035 0.965 27 H 0.074 0.926 28 H -0.008 1.008 29 H 0.032 0.968 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.487 -3.824 -10.184 10.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.053 4.053 3 H 0.060 0.940 4 C -0.021 4.021 5 H 0.094 0.906 6 N -0.365 5.365 7 C -0.201 4.201 8 C -0.083 4.083 9 N -0.228 5.228 10 C 0.057 3.943 11 C -0.542 4.542 12 H 0.080 0.920 13 C -0.147 4.147 14 N -0.539 5.539 15 Si 0.726 3.274 16 H -0.208 1.208 17 H -0.212 1.212 18 H -0.198 1.198 19 H 0.066 0.934 20 H 0.066 0.934 21 H 0.082 0.918 22 H 0.141 0.859 23 H 0.162 0.838 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.093 0.907 28 H 0.010 0.990 29 H 0.050 0.950 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.330 -3.496 -10.035 10.632 hybrid contribution 1.581 -0.387 1.057 1.941 sum 1.251 -3.882 -8.978 9.861 Atomic orbital electron populations 1.21399 0.93730 1.02128 0.99938 1.22659 0.96757 0.95248 0.90605 0.93968 1.22159 0.89433 0.94221 0.96274 0.90644 1.58978 1.42323 1.23436 1.11740 1.23232 0.98925 1.00216 0.97720 1.22866 0.92064 1.00216 0.93173 1.65491 1.16031 1.38514 1.02811 1.19880 0.96677 0.91314 0.86417 1.21128 1.47299 0.94922 0.90895 0.92047 1.24999 0.95632 0.95008 0.99084 1.69961 1.50357 1.09996 1.23610 0.86501 0.78211 0.80520 0.82212 1.20811 1.21246 1.19797 0.93370 0.93354 0.91830 0.85851 0.83762 0.91841 0.92187 0.94648 0.90717 0.99031 0.95017 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 8.82 37.16 0.33 -1.69 16 2 C 0.06 1.06 2.81 -66.06 -0.19 0.87 16 3 H 0.04 0.83 8.00 -51.93 -0.42 0.41 16 4 C 0.09 1.39 4.06 -66.33 -0.27 1.12 16 5 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 6 N -0.84 -11.20 7.89 -3.50 -0.03 -11.23 16 7 C -0.16 -2.44 6.77 -25.35 -0.17 -2.61 16 8 C 0.05 0.89 6.12 -2.18 -0.01 0.88 16 9 N -0.50 -11.04 5.01 -223.55 -1.12 -12.16 16 10 C 0.18 4.88 4.54 -4.98 -0.02 4.85 16 11 C -0.50 -14.46 8.97 -34.44 -0.31 -14.77 16 12 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 13 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 15 Si 0.90 21.97 29.54 -169.99 -5.02 16.94 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 H 0.05 0.93 7.31 -51.93 -0.38 0.55 16 20 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.06 1.11 6.66 -51.93 -0.35 0.76 16 22 H 0.33 3.62 9.08 -39.29 -0.36 3.26 16 23 H 0.35 4.95 8.05 -39.29 -0.32 4.63 16 24 H 0.06 0.90 7.95 -51.93 -0.41 0.49 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 27 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 28 H -0.01 -0.23 7.77 -51.93 -0.40 -0.63 16 29 H 0.03 0.91 7.18 -51.93 -0.37 0.53 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 243.01 15.07 3.66 3.66 Total: -1.00 -29.82 243.01 -7.15 -36.97 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -4.64 Total: 2.11 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -0.74 Total: -9.89 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -0.41 Total: -49.80 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.82 -7.15 -36.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306416537.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.668 kcal (2) G-P(sol) polarization free energy of solvation -29.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds