Wall clock time and date at job start Mon Mar 30 2020 02:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.45856 * 2 1 4 4 C 1.54387 * 110.40957 * 237.59232 * 2 1 3 5 5 H 1.08990 * 110.32427 * 98.36871 * 4 2 1 6 6 N 1.46900 * 110.32032 * 336.26334 * 4 2 1 7 7 C 1.54255 * 105.05670 * 217.36902 * 4 2 1 8 8 C 1.54383 * 105.06278 * 0.02562 * 7 4 2 9 9 N 1.48553 * 104.59483 * 23.84951 * 8 7 4 10 10 C 1.46899 * 111.00117 * 200.96181 * 9 8 7 11 11 C 1.50703 * 109.47107 * 285.42230 * 10 9 8 12 12 H 1.07996 * 119.99751 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00094 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99955 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47171 * 89.99544 * 15 13 11 17 17 H 1.48500 * 109.46632 * 209.99795 * 15 13 11 18 18 H 1.48494 * 109.47053 * 329.99231 * 15 13 11 19 19 H 1.08998 * 109.47484 * 299.04006 * 1 2 3 20 20 H 1.09005 * 109.47232 * 59.03442 * 1 2 3 21 21 H 1.09004 * 109.47839 * 179.03288 * 1 2 3 22 22 H 1.00907 * 110.99708 * 179.97438 * 6 4 2 23 23 H 1.00898 * 111.00597 * 303.95269 * 6 4 2 24 24 H 1.09004 * 110.32293 * 118.89780 * 7 4 2 25 25 H 1.09002 * 110.32538 * 241.10329 * 7 4 2 26 26 H 1.09003 * 110.40424 * 265.07051 * 8 7 4 27 27 H 1.08993 * 110.41069 * 142.63520 * 8 7 4 28 28 H 1.09002 * 109.47043 * 45.42210 * 10 9 8 29 29 H 1.09001 * 109.47354 * 165.42272 * 10 9 8 30 30 H 0.97000 * 120.00333 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0684 -0.7755 -1.2216 5 1 2.3398 -0.0841 -2.0193 6 7 1.0644 -1.7356 -1.6993 7 6 3.3177 -1.5188 -0.7056 8 6 3.4286 -1.1305 0.7845 9 7 2.0476 -0.7472 1.1753 10 6 2.0560 0.0999 2.3754 11 6 2.3493 -0.7476 3.5865 12 1 2.5127 -1.8094 3.4758 13 6 2.4080 -0.1676 4.8360 14 7 2.2086 1.1253 4.9708 15 14 2.7723 -1.2180 6.3371 16 1 4.2392 -1.2661 6.5635 17 1 2.1068 -0.6289 7.5267 18 1 2.2604 -2.5940 6.1144 19 1 -0.3634 0.4988 0.8984 20 1 -0.3634 0.5288 -0.8812 21 1 -0.3635 -1.0275 -0.0173 22 1 1.4059 -2.2482 -2.4986 23 1 0.7832 -2.3625 -0.9605 24 1 3.1860 -2.5961 -0.8069 25 1 4.2041 -1.1922 -1.2493 26 1 4.1068 -0.2860 0.9077 27 1 3.7686 -1.9813 1.3748 28 1 2.8242 0.8665 2.2736 29 1 1.0819 0.5750 2.4917 30 1 2.2495 1.5334 5.8499 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306416537.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:11 Heat of formation + Delta-G solvation = -23.126313 kcal Electronic energy + Delta-G solvation = -11626.371229 eV Core-core repulsion = 9648.130709 eV Total energy + Delta-G solvation = -1978.240520 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.23688 -35.68006 -34.10290 -32.25581 -30.51504 -27.74295 -25.89701 -24.29307 -21.73478 -20.39391 -18.51487 -17.60861 -16.58813 -16.13976 -15.57971 -15.37128 -14.73785 -14.28771 -13.96026 -13.50084 -13.35199 -12.85458 -12.75384 -12.65805 -12.31398 -12.11102 -11.86869 -11.66010 -11.52461 -11.22331 -10.63174 -9.51958 -9.18555 -8.22951 -6.33696 1.38382 1.40361 1.52192 2.38221 3.08983 3.35601 3.69444 3.72249 3.94878 4.28536 4.33711 4.57504 4.66377 4.79467 4.81705 4.93557 5.01334 5.07705 5.15387 5.22969 5.34722 5.48715 5.63839 6.02114 6.25160 6.31506 6.51324 6.75833 6.82041 7.36208 8.88377 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.062982 B = 0.010640 C = 0.009967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.461838 B = 2630.959882 C = 2808.732387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.047 3.953 3 H 0.027 0.973 4 C 0.104 3.896 5 H 0.096 0.904 6 N -0.832 5.832 7 C -0.146 4.146 8 C 0.039 3.961 9 N -0.510 5.510 10 C 0.200 3.800 11 C -0.523 4.523 12 H 0.060 0.940 13 C -0.001 4.001 14 N -0.935 5.935 15 Si 0.972 3.028 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.264 1.264 19 H 0.019 0.981 20 H 0.070 0.930 21 H 0.068 0.932 22 H 0.349 0.651 23 H 0.345 0.655 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.019 0.981 27 H 0.064 0.936 28 H -0.040 1.040 29 H 0.002 0.998 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.815 -5.345 -11.214 12.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.062 4.062 3 H 0.045 0.955 4 C -0.009 4.009 5 H 0.114 0.886 6 N -0.363 5.363 7 C -0.186 4.186 8 C -0.089 4.089 9 N -0.235 5.235 10 C 0.073 3.927 11 C -0.561 4.561 12 H 0.078 0.922 13 C -0.199 4.199 14 N -0.576 5.576 15 Si 0.796 3.204 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.189 1.189 19 H 0.039 0.961 20 H 0.089 0.911 21 H 0.087 0.913 22 H 0.163 0.837 23 H 0.159 0.841 24 H 0.099 0.901 25 H 0.103 0.897 26 H 0.037 0.963 27 H 0.083 0.917 28 H -0.023 1.023 29 H 0.020 0.980 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.000 -5.033 -11.104 12.191 hybrid contribution 1.463 0.120 1.332 1.982 sum 1.463 -4.913 -9.772 11.035 Atomic orbital electron populations 1.21339 0.93088 1.02351 0.99597 1.22822 0.97344 0.94908 0.91131 0.95496 1.22035 0.89372 0.94556 0.94960 0.88559 1.58901 1.41679 1.23496 1.12186 1.23181 1.00065 1.01282 0.94043 1.22924 0.90301 0.99139 0.96551 1.65398 1.17815 1.37691 1.02575 1.19495 0.93757 0.90846 0.88600 1.21426 1.47649 0.95016 0.92033 0.92173 1.25967 0.95077 0.96327 1.02501 1.70093 1.50998 1.11866 1.24630 0.85345 0.78417 0.78799 0.77831 1.19752 1.20576 1.18866 0.96146 0.91109 0.91333 0.83678 0.84142 0.90149 0.89680 0.96292 0.91748 1.02281 0.97970 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.72 8.82 71.98 0.64 -3.08 16 2 C 0.05 1.74 2.81 45.06 0.13 1.87 16 3 H 0.03 1.08 8.00 -2.39 -0.02 1.06 16 4 C 0.10 2.86 4.06 45.81 0.19 3.04 16 5 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 6 N -0.83 -19.53 7.89 -164.98 -1.30 -20.83 16 7 C -0.15 -4.00 6.77 31.49 0.21 -3.79 16 8 C 0.04 1.53 6.12 86.45 0.53 2.06 16 9 N -0.51 -22.71 5.01 -861.19 -4.31 -27.02 16 10 C 0.20 11.15 4.54 85.56 0.39 11.54 16 11 C -0.52 -30.72 8.97 25.60 0.23 -30.49 16 12 H 0.06 3.47 7.81 -2.91 -0.02 3.45 16 13 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 14 N -0.94 -57.78 13.29 21.45 0.28 -57.49 16 15 Si 0.97 45.22 29.54 68.60 2.03 47.24 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 19 H 0.02 0.79 7.31 -2.39 -0.02 0.77 16 20 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 21 H 0.07 2.31 6.66 -2.39 -0.02 2.30 16 22 H 0.35 6.20 9.08 -89.69 -0.81 5.39 16 23 H 0.34 8.82 8.05 -89.70 -0.72 8.09 16 24 H 0.08 1.97 7.95 -2.39 -0.02 1.96 16 25 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.02 0.78 7.75 -2.39 -0.02 0.77 16 27 H 0.06 2.59 8.14 -2.39 -0.02 2.58 16 28 H -0.04 -2.46 7.77 -2.39 -0.02 -2.48 16 29 H 0.00 0.13 7.18 -2.39 -0.02 0.12 16 30 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -65.25 243.01 -0.95 -66.20 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -0.41 Total: 10.34 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 2.77 Total: -18.44 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -5.33 Total: -105.34 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -65.25 -0.95 -66.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306416537.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.075 kcal (2) G-P(sol) polarization free energy of solvation -65.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds