Wall clock time and date at job start Mon Mar 30 2020 02:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 110.45878 * 2 1 4 4 C 1.54378 * 110.41156 * 122.41386 * 2 1 3 5 5 H 1.09001 * 110.32339 * 261.53235 * 4 2 1 6 6 N 1.46905 * 110.40838 * 23.68959 * 4 2 1 7 7 C 1.54256 * 105.06174 * 142.62994 * 4 2 1 8 8 C 1.54377 * 105.05892 * 359.97438 * 7 4 2 9 9 N 1.48560 * 104.59882 * 336.14816 * 8 7 4 10 10 C 1.46901 * 111.00129 * 159.03553 * 9 8 7 11 11 C 1.50701 * 109.46921 * 69.87505 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 H 1.08994 * 109.47070 * 180.95876 * 1 2 3 20 20 H 1.09004 * 109.46669 * 300.96241 * 1 2 3 21 21 H 1.09003 * 109.46925 * 60.95457 * 1 2 3 22 22 H 1.00899 * 110.99831 * 177.14014 * 6 4 2 23 23 H 1.00898 * 110.99892 * 301.09631 * 6 4 2 24 24 H 1.09005 * 110.32415 * 241.10715 * 7 4 2 25 25 H 1.08995 * 110.41154 * 118.94320 * 7 4 2 26 26 H 1.09000 * 110.41756 * 217.36625 * 8 7 4 27 27 H 1.09003 * 110.50970 * 94.97681 * 8 7 4 28 28 H 1.09002 * 109.47401 * 309.87533 * 10 9 8 29 29 H 1.09001 * 109.46874 * 189.87546 * 10 9 8 30 30 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0213 0.0000 4 6 2.0685 -0.7756 1.2214 5 1 2.3416 -0.0841 2.0186 6 7 1.0655 -1.7356 1.7014 7 6 3.3177 -1.5189 0.7054 8 6 3.4287 -1.1304 -0.7846 9 7 2.0476 -0.7472 -1.1754 10 6 2.0560 0.1001 -2.3754 11 6 2.4625 -0.7243 -3.5696 12 1 2.6913 -1.7729 -3.4493 13 6 2.5414 -0.1402 -4.8161 14 7 2.2623 1.1366 -4.9627 15 14 3.0445 -1.1623 -6.2964 16 1 2.0777 -2.2743 -6.4819 17 1 3.0531 -0.3058 -7.5095 18 1 4.4031 -1.7194 -6.0747 19 1 -0.3633 -1.0275 0.0172 20 1 -0.3633 0.5287 0.8813 21 1 -0.3633 0.4990 -0.8985 22 1 1.4254 -2.2802 2.4708 23 1 0.2102 -1.2665 1.9594 24 1 3.1860 -2.5962 0.8066 25 1 4.2049 -1.1939 1.2489 26 1 3.7686 -1.9812 -1.3751 27 1 4.1072 -0.2866 -0.9097 28 1 2.7655 0.9164 -2.2390 29 1 1.0588 0.5089 -2.5385 30 1 2.3182 1.5476 -5.8395 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306416540.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:19 Heat of formation + Delta-G solvation = -21.067745 kcal Electronic energy + Delta-G solvation = -11613.589910 eV Core-core repulsion = 9635.438656 eV Total energy + Delta-G solvation = -1978.151254 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.14745 -35.69231 -34.15417 -32.32319 -30.55029 -27.72108 -25.97433 -24.29259 -21.66249 -20.33359 -18.41644 -17.30829 -16.58402 -16.41724 -15.95026 -15.41658 -14.83023 -14.25170 -13.79663 -13.61921 -13.18170 -12.82960 -12.75160 -12.40827 -12.23943 -12.06333 -11.88626 -11.75021 -11.59213 -11.23163 -10.62036 -9.44117 -9.10079 -8.22172 -6.32711 1.38913 1.43076 1.51068 2.39372 3.09746 3.36559 3.69961 3.75037 3.88859 4.31626 4.34998 4.55668 4.68896 4.77073 4.79489 4.95067 5.00055 5.07913 5.19556 5.21430 5.37193 5.46719 5.64790 6.02624 6.27849 6.40775 6.59883 6.78545 6.83603 7.37160 8.89142 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.063723 B = 0.010641 C = 0.009879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.297367 B = 2630.772969 C = 2833.514096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.049 3.951 3 H 0.025 0.975 4 C 0.102 3.898 5 H 0.056 0.944 6 N -0.838 5.838 7 C -0.109 4.109 8 C 0.043 3.957 9 N -0.506 5.506 10 C 0.200 3.800 11 C -0.525 4.525 12 H 0.059 0.941 13 C 0.000 4.000 14 N -0.935 5.935 15 Si 0.972 3.028 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.267 1.267 19 H 0.074 0.926 20 H 0.078 0.922 21 H 0.025 0.975 22 H 0.349 0.651 23 H 0.349 0.651 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.062 0.938 27 H 0.019 0.981 28 H -0.042 1.042 29 H 0.002 0.998 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.040 -3.829 12.530 13.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.060 4.060 3 H 0.043 0.957 4 C -0.010 4.010 5 H 0.074 0.926 6 N -0.372 5.372 7 C -0.147 4.147 8 C -0.086 4.086 9 N -0.230 5.230 10 C 0.073 3.927 11 C -0.563 4.563 12 H 0.077 0.923 13 C -0.198 4.198 14 N -0.576 5.576 15 Si 0.796 3.204 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.192 1.192 19 H 0.093 0.907 20 H 0.096 0.904 21 H 0.044 0.956 22 H 0.163 0.837 23 H 0.164 0.836 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.081 0.919 27 H 0.037 0.963 28 H -0.024 1.024 29 H 0.020 0.980 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.264 -4.462 11.544 12.379 hybrid contribution 0.776 1.330 -0.181 1.550 sum 0.512 -3.132 11.363 11.798 Atomic orbital electron populations 1.21545 0.93385 1.02784 1.00502 1.22810 0.97306 0.94321 0.91592 0.95651 1.21901 0.92024 0.92769 0.94338 0.92605 1.58680 1.07149 1.28346 1.43074 1.22395 0.97218 1.01639 0.93491 1.22882 0.90221 0.98975 0.96497 1.65383 1.17872 1.37381 1.02370 1.19502 0.93884 0.90602 0.88729 1.21408 1.45561 0.96408 0.92963 0.92294 1.25961 0.95324 0.96232 1.02275 1.70086 1.50260 1.12540 1.24674 0.85402 0.79120 0.78342 0.77550 1.19319 1.20546 1.19165 0.90694 0.90369 0.95572 0.83663 0.83643 0.89910 0.89628 0.91910 0.96292 1.02399 0.98033 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.20 8.26 71.98 0.59 -3.60 16 2 C 0.05 1.83 2.86 45.06 0.13 1.96 16 3 H 0.03 1.02 8.00 -2.38 -0.02 1.00 16 4 C 0.10 2.87 4.09 45.81 0.19 3.06 16 5 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 6 N -0.84 -19.91 8.24 -164.97 -1.36 -21.27 16 7 C -0.11 -3.23 6.78 31.49 0.21 -3.02 16 8 C 0.04 1.75 5.97 86.45 0.52 2.26 16 9 N -0.51 -23.50 5.04 -861.15 -4.34 -27.84 16 10 C 0.20 11.36 4.51 85.56 0.39 11.75 16 11 C -0.53 -31.46 8.82 25.60 0.23 -31.23 16 12 H 0.06 3.48 7.61 -2.91 -0.02 3.46 16 13 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 14 N -0.94 -58.22 13.29 21.45 0.28 -57.94 16 15 Si 0.97 45.80 29.54 68.60 2.03 47.82 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 H 0.07 2.54 7.05 -2.39 -0.02 2.52 16 20 H 0.08 2.00 7.94 -2.38 -0.02 1.98 16 21 H 0.03 1.00 7.35 -2.39 -0.02 0.98 16 22 H 0.35 6.36 9.06 -89.70 -0.81 5.55 16 23 H 0.35 7.17 7.30 -89.70 -0.65 6.52 16 24 H 0.08 2.35 7.95 -2.38 -0.02 2.33 16 25 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.06 2.68 7.94 -2.39 -0.02 2.66 16 27 H 0.02 0.81 7.82 -2.39 -0.02 0.79 16 28 H -0.04 -2.56 7.88 -2.39 -0.02 -2.58 16 29 H 0.00 0.10 7.27 -2.39 -0.02 0.08 16 30 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -68.16 241.93 -1.02 -69.18 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -0.34 Total: 8.40 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 2.71 Total: -18.36 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -5.42 Total: -107.05 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -68.16 -1.02 -69.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306416540.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.114 kcal (2) G-P(sol) polarization free energy of solvation -68.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds