Wall clock time and date at job start Mon Mar 30 2020 02:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.50699 * 109.47056 * 240.00545 * 2 1 3 5 5 H 1.08006 * 119.99456 * 245.77860 * 4 2 1 6 6 C 1.37880 * 120.00527 * 65.77419 * 4 2 1 7 7 N 1.31508 * 120.00024 * 185.41501 * 6 4 2 8 8 Si 1.86805 * 119.99513 * 5.41327 * 6 4 2 9 9 H 1.48495 * 109.47029 * 269.99866 * 8 6 4 10 10 H 1.48495 * 109.47289 * 30.00181 * 8 6 4 11 11 H 1.48504 * 109.46680 * 150.00099 * 8 6 4 12 12 N 1.46894 * 109.46907 * 120.00117 * 2 1 3 13 13 N 1.45393 * 110.99980 * 268.47203 * 12 2 1 14 14 C 1.48530 * 111.00598 * 5.18589 * 13 12 2 15 15 C 1.54933 * 103.23290 * 159.71973 * 14 13 12 16 16 C 1.54604 * 102.92173 * 322.59024 * 15 14 13 17 17 C 1.47904 * 111.00196 * 122.58944 * 13 12 2 18 18 H 1.08994 * 109.47358 * 293.39658 * 1 2 3 19 19 H 1.09006 * 109.47422 * 53.39988 * 1 2 3 20 20 H 1.09005 * 109.47159 * 173.39467 * 1 2 3 21 21 H 0.97002 * 120.00238 * 354.98617 * 7 6 4 22 22 H 1.00902 * 110.99909 * 144.52062 * 12 2 1 23 23 H 1.09004 * 110.66983 * 278.16327 * 14 13 12 24 24 H 1.09007 * 110.66333 * 41.28520 * 14 13 12 25 25 H 1.08995 * 110.72856 * 204.23284 * 15 14 13 26 26 H 1.09001 * 110.72519 * 80.94349 * 15 14 13 27 27 H 1.09000 * 110.30625 * 263.04144 * 16 15 14 28 28 H 1.09002 * 110.30605 * 140.86767 * 16 15 14 29 29 H 1.09008 * 109.91055 * 333.50069 * 17 13 12 30 30 H 1.08998 * 109.92476 * 94.60050 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5741 -1.6396 -1.1342 6 6 1.8002 -0.1739 -2.4793 7 7 2.1438 -0.8444 -3.5572 8 14 0.9977 1.5053 -2.6400 9 1 -0.4769 1.3447 -2.7081 10 1 1.3511 2.3376 -1.4620 11 1 1.4812 2.1685 -3.8777 12 7 2.0196 -0.6925 1.1994 13 7 2.2274 0.2430 2.2928 14 6 1.7681 1.6059 1.9220 15 6 1.5666 2.2977 3.2936 16 6 0.9964 1.1614 4.1734 17 6 1.4314 -0.1421 3.4784 18 1 -0.3634 0.4080 0.9431 19 1 -0.3634 0.6127 -0.8251 20 1 -0.3634 -1.0209 -0.1182 21 1 2.6255 -1.6823 -3.4742 22 1 2.8634 -1.2086 0.9998 23 1 2.5298 2.1231 1.3384 24 1 0.8276 1.5588 1.3730 25 1 0.8525 3.1170 3.2112 26 1 2.5179 2.6522 3.6903 27 1 -0.0910 1.2239 4.2140 28 1 1.4171 1.2133 5.1777 29 1 0.5531 -0.7083 3.1680 30 1 2.0396 -0.7422 4.1553 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306469873.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:50 Heat of formation + Delta-G solvation = 38.013176 kcal Electronic energy + Delta-G solvation = -11812.560605 eV Core-core repulsion = 9836.971292 eV Total energy + Delta-G solvation = -1975.589313 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.54282 -34.83120 -32.23026 -30.08787 -28.39159 -26.76334 -24.48808 -21.50060 -20.41206 -18.98480 -17.63089 -16.11727 -15.75478 -14.63391 -13.67032 -13.48024 -13.10798 -12.74666 -12.15065 -11.90934 -11.60210 -11.52301 -11.15310 -11.06433 -10.81697 -10.55117 -10.24612 -10.03207 -9.80821 -8.76396 -8.70997 -8.48277 -7.18481 -6.48283 -4.15324 3.32230 3.37130 3.52813 4.21004 4.42495 4.85931 4.99414 5.19324 5.25848 5.65831 5.74626 5.82817 5.96979 6.05035 6.21309 6.28597 6.30422 6.34588 6.45664 6.52114 6.69116 6.87507 7.16403 7.40243 7.71263 8.11321 8.33537 8.53067 8.86941 9.54940 10.91104 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.060464 B = 0.012975 C = 0.011733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.971112 B = 2157.395283 C = 2385.942357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.154 3.846 3 H 0.027 0.973 4 C -0.598 4.598 5 H 0.062 0.938 6 C 0.030 3.970 7 N -0.911 5.911 8 Si 1.057 2.943 9 H -0.283 1.283 10 H -0.281 1.281 11 H -0.289 1.289 12 N -0.531 5.531 13 N -0.370 5.370 14 C 0.007 3.993 15 C -0.124 4.124 16 C -0.131 4.131 17 C 0.043 3.957 18 H 0.025 0.975 19 H 0.041 0.959 20 H 0.054 0.946 21 H 0.268 0.732 22 H 0.352 0.648 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.594 5.700 11.861 13.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.044 3.956 3 H 0.044 0.956 4 C -0.637 4.637 5 H 0.080 0.920 6 C -0.175 4.175 7 N -0.545 5.545 8 Si 0.886 3.114 9 H -0.210 1.210 10 H -0.207 1.207 11 H -0.215 1.215 12 N -0.255 5.255 13 N -0.184 5.184 14 C -0.122 4.122 15 C -0.163 4.163 16 C -0.170 4.170 17 C -0.086 4.086 18 H 0.044 0.956 19 H 0.060 0.940 20 H 0.074 0.926 21 H 0.078 0.922 22 H 0.171 0.829 23 H 0.095 0.905 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.215 6.563 11.073 13.267 hybrid contribution 0.472 -0.808 0.520 1.070 sum -2.744 5.755 11.592 13.230 Atomic orbital electron populations 1.22180 0.98677 1.01100 0.97639 1.20104 0.91882 0.95107 0.88500 0.95566 1.22170 1.40248 1.10068 0.91259 0.92031 1.25728 0.96331 1.03596 0.91854 1.70799 1.36907 1.16557 1.30233 0.83818 0.76398 0.75586 0.75566 1.20976 1.20726 1.21529 1.63816 1.35291 1.21173 1.05205 1.67964 1.48823 0.99241 1.02355 1.23720 1.01053 0.90675 0.96731 1.22472 1.00919 0.97331 0.95602 1.22420 1.00293 0.95192 0.99086 1.22782 0.97074 0.96296 0.92456 0.95576 0.94035 0.92643 0.92169 0.82885 0.90481 0.91131 0.91433 0.91186 0.91882 0.91517 0.92775 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.42 37.16 0.31 -2.81 16 2 C 0.15 3.73 1.71 -68.87 -0.12 3.61 16 3 H 0.03 0.66 3.73 -51.93 -0.19 0.47 16 4 C -0.60 -16.90 8.91 -34.44 -0.31 -17.20 16 5 H 0.06 1.86 7.81 -52.48 -0.41 1.45 16 6 C 0.03 0.87 5.43 -17.82 -0.10 0.77 16 7 N -0.91 -28.11 13.70 55.43 0.76 -27.35 16 8 Si 1.06 25.65 25.32 -169.99 -4.30 21.34 16 9 H -0.28 -6.55 6.82 56.52 0.39 -6.16 16 10 H -0.28 -6.34 6.35 56.52 0.36 -5.98 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 N -0.53 -11.74 6.73 -5.66 -0.04 -11.78 16 13 N -0.37 -7.10 6.19 -110.08 -0.68 -7.78 16 14 C 0.01 0.12 4.96 -1.90 -0.01 0.11 16 15 C -0.12 -1.73 7.06 -24.87 -0.18 -1.90 16 16 C -0.13 -1.73 6.93 -25.37 -0.18 -1.90 16 17 C 0.04 0.69 6.97 -2.75 -0.02 0.67 16 18 H 0.03 0.52 6.58 -51.93 -0.34 0.18 16 19 H 0.04 0.93 4.50 -51.93 -0.23 0.70 16 20 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 21 H 0.27 8.24 8.72 -40.82 -0.36 7.88 16 22 H 0.35 7.97 8.35 -174.66 -1.46 6.51 16 23 H 0.08 1.45 7.53 -51.93 -0.39 1.06 16 24 H 0.07 1.37 4.29 -51.92 -0.22 1.15 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.94 8.00 -51.92 -0.42 0.52 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 230.96 15.07 3.48 3.48 Total: -1.00 -29.71 230.96 -6.79 -36.50 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.41 Total: 4.25 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -0.59 Total: -18.66 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.04 Total: -46.91 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -4.30 Total: 21.34 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -29.71 -6.79 -36.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306469873.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.511 kcal (2) G-P(sol) polarization free energy of solvation -29.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds