Wall clock time and date at job start Mon Mar 30 2020 02:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08988 * 109.70070 * 2 1 4 4 C 1.53193 * 109.58265 * 239.64196 * 2 1 3 5 5 H 1.09002 * 109.49216 * 174.89685 * 4 2 1 6 6 N 1.46901 * 109.49848 * 54.83771 * 4 2 1 7 7 C 1.53038 * 109.34432 * 294.86378 * 4 2 1 8 8 C 1.53043 * 109.53535 * 298.62262 * 7 4 2 9 9 C 1.53186 * 109.31543 * 61.36521 * 8 7 4 10 10 N 1.46932 * 108.77514 * 305.36274 * 9 8 7 11 11 C 1.36932 * 120.62979 * 233.63233 * 10 9 8 12 12 H 1.07996 * 119.99980 * 151.83849 * 11 10 9 13 13 C 1.38812 * 120.00230 * 331.82818 * 11 10 9 14 14 N 1.31622 * 119.99895 * 343.07772 * 13 11 10 15 15 Si 1.86799 * 120.00244 * 163.07740 * 13 11 10 16 16 H 1.48504 * 109.47034 * 60.00026 * 15 13 11 17 17 H 1.48498 * 109.47346 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47092 * 300.00279 * 15 13 11 19 19 H 1.09008 * 109.47265 * 180.35618 * 1 2 3 20 20 H 1.08996 * 109.47154 * 300.35228 * 1 2 3 21 21 H 1.08995 * 109.47059 * 60.35907 * 1 2 3 22 22 H 1.00891 * 110.99760 * 180.02562 * 6 4 2 23 23 H 1.00900 * 110.99687 * 304.00924 * 6 4 2 24 24 H 1.08998 * 109.45943 * 58.64066 * 7 4 2 25 25 H 1.08994 * 109.45981 * 178.61731 * 7 4 2 26 26 H 1.09003 * 109.49419 * 181.31854 * 8 7 4 27 27 H 1.09000 * 109.49688 * 301.37516 * 8 7 4 28 28 H 1.09004 * 109.58779 * 65.14935 * 9 8 7 29 29 H 1.08999 * 109.58984 * 185.43598 * 9 8 7 30 30 H 0.97004 * 120.00038 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7295 -1.2454 5 1 3.1297 -0.6504 -1.2913 6 7 1.4565 -0.1212 -2.4468 7 6 1.6414 -2.2042 -1.1710 8 6 2.2800 -2.8471 0.0623 9 6 1.7692 -2.1425 1.3229 10 7 2.0227 -0.7009 1.1945 11 6 2.7054 -0.0231 2.1689 12 1 3.2768 0.8574 1.9148 13 6 2.6628 -0.4674 3.4833 14 7 1.7287 -1.3139 3.8619 15 14 3.9313 0.1357 4.7147 16 1 3.8431 1.6135 4.8326 17 1 3.6694 -0.4835 6.0388 18 1 5.2903 -0.2436 4.2515 19 1 -0.3634 -1.0277 0.0064 20 1 -0.3633 0.5193 0.8868 21 1 -0.3633 0.5082 -0.8931 22 1 1.7799 -0.5856 -3.2821 23 1 0.4487 -0.1242 -2.3980 24 1 0.5565 -2.2816 -1.1001 25 1 1.9845 -2.7198 -2.0678 26 1 2.0123 -3.9030 0.1019 27 1 3.3640 -2.7487 0.0037 28 1 0.6987 -2.3171 1.4308 29 1 2.2927 -2.5312 2.1964 30 1 1.6991 -1.6247 4.7803 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306836257.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:41 Heat of formation + Delta-G solvation = 11.773219 kcal Electronic energy + Delta-G solvation = -12024.624042 eV Core-core repulsion = 10047.896879 eV Total energy + Delta-G solvation = -1976.727163 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.29184 -34.02446 -31.81923 -31.05556 -28.38793 -26.18937 -24.32961 -21.78215 -21.12149 -18.09859 -16.64195 -15.74993 -14.92785 -14.12511 -14.01381 -13.05863 -12.88695 -12.80179 -12.26635 -12.11619 -11.43095 -11.16333 -10.91008 -10.71337 -10.31373 -10.13152 -10.10919 -9.85396 -9.70954 -9.33167 -8.42733 -8.17242 -6.62893 -5.74971 -3.17070 3.41434 3.46592 3.48375 4.51239 5.04168 5.37137 5.46840 5.58428 5.63373 5.84796 6.04248 6.16107 6.30040 6.42686 6.49262 6.63865 6.66681 6.75980 6.84473 7.04848 7.21856 7.44052 7.59038 7.71334 7.83581 7.84799 8.50479 9.26207 9.89836 10.46774 11.33505 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.057816 B = 0.013485 C = 0.012757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.179358 B = 2075.934681 C = 2194.384040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.176 3.824 3 H 0.065 0.935 4 C 0.079 3.921 5 H 0.074 0.926 6 N -0.846 5.846 7 C -0.142 4.142 8 C -0.140 4.140 9 C 0.170 3.830 10 N -0.584 5.584 11 C -0.251 4.251 12 H 0.065 0.935 13 C 0.002 3.998 14 N -0.903 5.903 15 Si 0.902 3.098 16 H -0.283 1.283 17 H -0.291 1.291 18 H -0.284 1.284 19 H 0.045 0.955 20 H 0.053 0.947 21 H 0.041 0.959 22 H 0.329 0.671 23 H 0.335 0.665 24 H 0.055 0.945 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.017 0.983 29 H 0.086 0.914 30 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.805 -1.402 -8.165 8.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.068 3.932 3 H 0.084 0.916 4 C -0.034 4.034 5 H 0.092 0.908 6 N -0.375 5.375 7 C -0.182 4.182 8 C -0.180 4.180 9 C 0.044 3.956 10 N -0.306 5.306 11 C -0.380 4.380 12 H 0.083 0.917 13 C -0.196 4.196 14 N -0.548 5.548 15 Si 0.732 3.268 16 H -0.209 1.209 17 H -0.217 1.217 18 H -0.211 1.211 19 H 0.064 0.936 20 H 0.072 0.928 21 H 0.060 0.940 22 H 0.140 0.860 23 H 0.149 0.851 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.035 0.965 29 H 0.104 0.896 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.444 -0.782 -7.739 7.791 hybrid contribution 0.117 -0.809 0.535 0.977 sum -0.327 -1.592 -7.204 7.385 Atomic orbital electron populations 1.22276 0.99153 1.00612 1.00074 1.20415 0.91533 0.95246 0.85972 0.91639 1.21997 0.99079 0.91533 0.90811 0.90777 1.59041 1.13085 1.61176 1.04217 1.22267 1.00375 0.97679 0.97855 1.22154 1.00205 0.98152 0.97454 1.20759 0.97357 0.83235 0.94227 1.44106 1.64040 1.03470 1.18993 1.19159 1.21720 1.10487 0.86680 0.91708 1.25035 0.97749 1.00067 0.96754 1.70034 1.31851 1.36010 1.16883 0.86370 0.81607 0.78388 0.80413 1.20875 1.21704 1.21064 0.93613 0.92760 0.94037 0.85957 0.85101 0.92673 0.94193 0.93582 0.92774 0.96502 0.89616 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 8.56 37.16 0.32 -2.87 16 2 C 0.18 3.80 3.05 -67.56 -0.21 3.59 16 3 H 0.07 1.49 7.93 -51.94 -0.41 1.07 16 4 C 0.08 1.43 3.16 -67.59 -0.21 1.22 16 5 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 6 N -0.85 -12.79 9.18 -4.56 -0.04 -12.83 16 7 C -0.14 -2.47 5.25 -26.69 -0.14 -2.61 16 8 C -0.14 -2.76 6.08 -26.61 -0.16 -2.92 16 9 C 0.17 4.12 4.89 -3.71 -0.02 4.10 16 10 N -0.58 -14.77 2.70 -164.72 -0.45 -15.22 16 11 C -0.25 -6.99 9.58 -15.06 -0.14 -7.13 16 12 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 13 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 14 N -0.90 -26.42 11.19 55.49 0.62 -25.80 16 15 Si 0.90 21.96 29.59 -169.99 -5.03 16.93 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H 0.04 0.90 5.72 -51.92 -0.30 0.60 16 20 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 21 H 0.04 0.69 6.53 -51.93 -0.34 0.35 16 22 H 0.33 4.24 9.04 -39.30 -0.36 3.88 16 23 H 0.34 4.76 6.88 -39.29 -0.27 4.49 16 24 H 0.05 0.96 6.51 -51.93 -0.34 0.62 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.02 0.43 7.48 -51.93 -0.39 0.04 16 29 H 0.09 2.32 6.06 -51.93 -0.31 2.01 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 232.54 15.07 3.50 3.50 Total: -1.00 -28.89 232.54 -6.42 -35.31 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -4.38 Total: 4.75 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -0.65 Total: -6.64 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.13 Total: -53.85 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -28.89 -6.42 -35.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306836257.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.084 kcal (2) G-P(sol) polarization free energy of solvation -28.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds