Wall clock time and date at job start Mon Mar 30 2020 02:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08988 * 109.70070 * 2 1 4 4 C 1.53193 * 109.58265 * 239.64196 * 2 1 3 5 5 H 1.09002 * 109.49216 * 174.89685 * 4 2 1 6 6 N 1.46901 * 109.49848 * 54.83771 * 4 2 1 7 7 C 1.53038 * 109.34432 * 294.86378 * 4 2 1 8 8 C 1.53043 * 109.53535 * 298.62262 * 7 4 2 9 9 C 1.53186 * 109.31543 * 61.36521 * 8 7 4 10 10 N 1.46932 * 108.77514 * 305.36274 * 9 8 7 11 11 C 1.36932 * 120.62979 * 233.63233 * 10 9 8 12 12 H 1.07996 * 119.99980 * 151.83849 * 11 10 9 13 13 C 1.38812 * 120.00230 * 331.82818 * 11 10 9 14 14 N 1.31622 * 119.99895 * 343.07772 * 13 11 10 15 15 Si 1.86799 * 120.00244 * 163.07740 * 13 11 10 16 16 H 1.48504 * 109.47034 * 60.00026 * 15 13 11 17 17 H 1.48498 * 109.47346 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47092 * 300.00279 * 15 13 11 19 19 H 1.09008 * 109.47265 * 180.35618 * 1 2 3 20 20 H 1.08996 * 109.47154 * 300.35228 * 1 2 3 21 21 H 1.08995 * 109.47059 * 60.35907 * 1 2 3 22 22 H 1.00891 * 110.99760 * 180.02562 * 6 4 2 23 23 H 1.00900 * 110.99687 * 304.00924 * 6 4 2 24 24 H 1.08998 * 109.45943 * 58.64066 * 7 4 2 25 25 H 1.08994 * 109.45981 * 178.61731 * 7 4 2 26 26 H 1.09003 * 109.49419 * 181.31854 * 8 7 4 27 27 H 1.09000 * 109.49688 * 301.37516 * 8 7 4 28 28 H 1.09004 * 109.58779 * 65.14935 * 9 8 7 29 29 H 1.08999 * 109.58984 * 185.43598 * 9 8 7 30 30 H 0.97004 * 120.00038 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7295 -1.2454 5 1 3.1297 -0.6504 -1.2913 6 7 1.4565 -0.1212 -2.4468 7 6 1.6414 -2.2042 -1.1710 8 6 2.2800 -2.8471 0.0623 9 6 1.7692 -2.1425 1.3229 10 7 2.0227 -0.7009 1.1945 11 6 2.7054 -0.0231 2.1689 12 1 3.2768 0.8574 1.9148 13 6 2.6628 -0.4674 3.4833 14 7 1.7287 -1.3139 3.8619 15 14 3.9313 0.1357 4.7147 16 1 3.8431 1.6135 4.8326 17 1 3.6694 -0.4835 6.0388 18 1 5.2903 -0.2436 4.2515 19 1 -0.3634 -1.0277 0.0064 20 1 -0.3633 0.5193 0.8868 21 1 -0.3633 0.5082 -0.8931 22 1 1.7799 -0.5856 -3.2821 23 1 0.4487 -0.1242 -2.3980 24 1 0.5565 -2.2816 -1.1001 25 1 1.9845 -2.7198 -2.0678 26 1 2.0123 -3.9030 0.1019 27 1 3.3640 -2.7487 0.0037 28 1 0.6987 -2.3171 1.4308 29 1 2.2927 -2.5312 2.1964 30 1 1.6991 -1.6247 4.7803 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306836257.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:41 Heat of formation + Delta-G solvation = -8.378543 kcal Electronic energy + Delta-G solvation = -12025.497888 eV Core-core repulsion = 10047.896879 eV Total energy + Delta-G solvation = -1977.601009 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.94240 -35.81566 -33.52028 -32.87554 -30.12730 -27.85344 -26.22808 -23.49584 -22.83144 -19.81435 -18.58184 -17.20427 -16.89537 -15.92783 -15.58748 -14.78217 -14.50742 -14.42272 -14.08307 -13.73615 -13.07658 -12.95923 -12.75049 -12.59828 -12.16323 -11.95279 -11.79703 -11.57865 -11.50401 -11.07261 -10.51007 -9.46711 -8.65706 -7.86916 -5.31658 1.46054 1.48278 1.55137 2.50837 3.27164 3.55822 3.90023 4.02325 4.08092 4.31821 4.46189 4.55617 4.75004 4.83786 4.92826 4.94507 5.09298 5.16854 5.29026 5.37915 5.50008 5.57696 5.67619 5.81867 6.30266 6.43555 6.74173 7.16598 7.89111 8.39910 9.19017 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.057816 B = 0.013485 C = 0.012757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.179358 B = 2075.934681 C = 2194.384040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.168 3.832 3 H 0.047 0.953 4 C 0.092 3.908 5 H 0.060 0.940 6 N -0.842 5.842 7 C -0.134 4.134 8 C -0.132 4.132 9 C 0.176 3.824 10 N -0.601 5.601 11 C -0.264 4.264 12 H 0.061 0.939 13 C -0.048 4.048 14 N -0.933 5.933 15 Si 0.966 3.034 16 H -0.276 1.276 17 H -0.293 1.293 18 H -0.279 1.279 19 H 0.045 0.955 20 H 0.025 0.975 21 H 0.076 0.924 22 H 0.348 0.652 23 H 0.344 0.656 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.048 0.952 28 H -0.003 1.003 29 H 0.049 0.951 30 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.627 -1.506 -9.887 10.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.061 3.939 3 H 0.065 0.935 4 C -0.021 4.021 5 H 0.078 0.922 6 N -0.373 5.373 7 C -0.174 4.174 8 C -0.171 4.171 9 C 0.051 3.949 10 N -0.324 5.324 11 C -0.395 4.395 12 H 0.079 0.921 13 C -0.244 4.244 14 N -0.579 5.579 15 Si 0.794 3.206 16 H -0.202 1.202 17 H -0.219 1.219 18 H -0.205 1.205 19 H 0.064 0.936 20 H 0.044 0.956 21 H 0.095 0.905 22 H 0.162 0.838 23 H 0.159 0.841 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.015 0.985 29 H 0.068 0.932 30 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.269 -0.878 -9.509 9.553 hybrid contribution 0.036 -0.742 1.021 1.263 sum -0.234 -1.620 -8.488 8.644 Atomic orbital electron populations 1.22127 0.97681 1.00646 1.00413 1.20589 0.92622 0.94517 0.86213 0.93464 1.21631 0.98236 0.91859 0.90365 0.92157 1.58896 1.13662 1.61050 1.03676 1.22213 1.00460 0.96895 0.97788 1.22005 0.99834 0.99041 0.96243 1.20569 0.95748 0.83298 0.95319 1.44321 1.64404 1.04088 1.19603 1.19452 1.21864 1.10494 0.87666 0.92093 1.25761 0.99514 1.00684 0.98419 1.70184 1.33431 1.37402 1.16898 0.85370 0.79329 0.78014 0.77917 1.20208 1.21890 1.20472 0.93610 0.95607 0.90487 0.83841 0.84121 0.92199 0.90837 0.91456 0.93321 0.98470 0.93211 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.72 8.56 71.98 0.62 -5.10 16 2 C 0.17 7.11 3.05 44.96 0.14 7.24 16 3 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 4 C 0.09 3.15 3.16 44.99 0.14 3.29 16 5 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 6 N -0.84 -22.44 9.18 -168.35 -1.55 -23.98 16 7 C -0.13 -4.23 5.25 30.62 0.16 -4.07 16 8 C -0.13 -4.98 6.08 30.67 0.19 -4.79 16 9 C 0.18 8.64 4.89 86.36 0.42 9.06 16 10 N -0.60 -30.77 2.70 -675.07 -1.82 -32.60 16 11 C -0.26 -15.00 9.58 84.03 0.81 -14.20 16 12 H 0.06 3.42 7.88 -2.91 -0.02 3.40 16 13 C -0.05 -2.76 4.92 84.86 0.42 -2.34 16 14 N -0.93 -56.06 11.19 21.65 0.24 -55.82 16 15 Si 0.97 45.81 29.59 68.60 2.03 47.84 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 17 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 H 0.04 1.74 5.72 -2.38 -0.01 1.72 16 20 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.08 2.36 6.53 -2.39 -0.02 2.35 16 22 H 0.35 7.45 9.04 -89.70 -0.81 6.64 16 23 H 0.34 8.37 6.88 -89.69 -0.62 7.75 16 24 H 0.06 1.86 6.51 -2.39 -0.02 1.85 16 25 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.00 -0.14 7.48 -2.39 -0.02 -0.16 16 29 H 0.05 2.78 6.06 -2.39 -0.01 2.76 16 30 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 Total: -1.00 -62.80 232.54 1.50 -61.30 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -0.29 Total: 14.16 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 2.89 Total: -10.91 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -3.13 Total: -112.40 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -62.80 1.50 -61.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306836257.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.922 kcal (2) G-P(sol) polarization free energy of solvation -62.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds