Wall clock time and date at job start Mon Mar 30 2020 02:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47092 * 2 1 4 4 C 1.50704 * 109.47218 * 239.99765 * 2 1 3 5 5 H 1.07993 * 120.00078 * 245.64062 * 4 2 1 6 6 C 1.37877 * 119.99876 * 65.63840 * 4 2 1 7 7 N 1.31511 * 119.99745 * 197.74890 * 6 4 2 8 8 Si 1.86806 * 119.99994 * 17.47332 * 6 4 2 9 9 H 1.48497 * 109.46962 * 180.27554 * 8 6 4 10 10 H 1.48502 * 109.46750 * 300.27628 * 8 6 4 11 11 H 1.48494 * 109.46992 * 60.27539 * 8 6 4 12 12 N 1.46906 * 109.46985 * 119.99952 * 2 1 3 13 13 C 1.46898 * 110.99636 * 275.00276 * 12 2 1 14 14 C 1.53939 * 113.73011 * 251.72415 * 13 12 2 15 15 N 1.47955 * 86.18182 * 221.92316 * 14 13 12 16 16 C 1.46903 * 110.99970 * 137.58097 * 15 14 13 17 17 C 1.47957 * 90.76440 * 24.69179 * 15 14 13 18 18 H 1.09004 * 109.46842 * 66.37030 * 1 2 3 19 19 H 1.08999 * 109.47383 * 186.37158 * 1 2 3 20 20 H 1.08995 * 109.47017 * 306.37303 * 1 2 3 21 21 H 0.97000 * 120.00572 * 354.60472 * 7 6 4 22 22 H 1.00896 * 110.99994 * 151.04168 * 12 2 1 23 23 H 1.08994 * 112.94664 * 23.42823 * 13 12 2 24 24 H 1.09005 * 113.76061 * 336.23806 * 14 13 12 25 25 H 1.09001 * 113.75787 * 107.60600 * 14 13 12 26 26 H 1.09001 * 109.47303 * 320.64198 * 16 15 14 27 27 H 1.09006 * 109.47011 * 80.64366 * 16 15 14 28 28 H 1.09003 * 109.46968 * 200.64109 * 16 15 14 29 29 H 1.09004 * 113.76298 * 220.99635 * 17 15 14 30 30 H 1.09004 * 113.76451 * 89.62502 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.5760 -1.6386 -1.1340 6 6 1.7978 -0.1756 -2.4794 7 7 1.9118 -0.9307 -3.5501 8 14 1.3105 1.6197 -2.6501 9 1 1.1107 1.9440 -4.0854 10 1 0.0478 1.8626 -1.9072 11 1 2.3857 2.4795 -2.0933 12 7 2.0196 -0.6925 1.1995 13 6 2.0823 0.2226 2.3469 14 6 3.5161 0.6030 2.7583 15 7 3.0543 0.4352 4.1539 16 6 4.0582 -0.2733 4.9591 17 6 1.9845 -0.4855 3.7102 18 1 -0.3633 0.4119 -0.9415 19 1 -0.3634 -1.0213 0.1140 20 1 -0.3633 0.6094 0.8274 21 1 2.2362 -1.8412 -3.4692 22 1 2.9172 -1.1206 1.0288 23 1 1.4119 1.0762 2.2468 24 1 4.2681 -0.1252 2.4541 25 1 3.7881 1.6279 2.5059 26 1 4.5064 -1.0686 4.3634 27 1 4.8329 0.4268 5.2722 28 1 3.5803 -0.7038 5.8391 29 1 1.0328 -0.3303 4.2184 30 1 2.2885 -1.5320 3.6843 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306980067.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:39 Heat of formation + Delta-G solvation = 9.767806 kcal Electronic energy + Delta-G solvation = -11451.122036 eV Core-core repulsion = 9474.307912 eV Total energy + Delta-G solvation = -1976.814124 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.89746 -37.14516 -34.35857 -31.65951 -29.14827 -27.07615 -26.75141 -24.03828 -21.60912 -20.95536 -19.52341 -17.08432 -16.86310 -16.23172 -15.76782 -15.17525 -14.82360 -14.53554 -13.93781 -13.67470 -13.61245 -13.05513 -12.88003 -12.58912 -12.29157 -12.07427 -11.75267 -11.60734 -11.46352 -11.00270 -10.41264 -9.90708 -9.16939 -8.74745 -6.38444 1.46571 1.52431 1.71986 2.47816 2.94196 3.05020 3.41730 3.70013 4.03782 4.18342 4.32370 4.47462 4.54790 4.58958 4.68405 4.83002 4.86465 4.92560 4.96049 5.01534 5.19193 5.30210 5.60083 5.78167 6.01260 6.03875 6.28786 6.64017 6.75533 7.39934 8.62596 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.065830 B = 0.010026 C = 0.009922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.236177 B = 2792.160305 C = 2821.373845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.190 3.810 3 H -0.001 1.001 4 C -0.608 4.608 5 H 0.022 0.978 6 C -0.019 4.019 7 N -0.937 5.937 8 Si 1.084 2.916 9 H -0.289 1.289 10 H -0.242 1.242 11 H -0.266 1.266 12 N -0.674 5.674 13 C 0.056 3.944 14 C -0.024 4.024 15 N -0.491 5.491 16 C -0.009 4.009 17 C 0.017 3.983 18 H 0.044 0.956 19 H 0.039 0.961 20 H 0.049 0.951 21 H 0.252 0.748 22 H 0.334 0.666 23 H 0.096 0.904 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.033 0.967 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.260 4.401 13.903 14.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.081 3.919 3 H 0.017 0.983 4 C -0.646 4.646 5 H 0.041 0.959 6 C -0.217 4.217 7 N -0.573 5.573 8 Si 0.905 3.095 9 H -0.215 1.215 10 H -0.167 1.167 11 H -0.191 1.191 12 N -0.304 5.304 13 C -0.056 4.056 14 C -0.155 4.155 15 N -0.214 5.214 16 C -0.158 4.158 17 C -0.113 4.113 18 H 0.063 0.937 19 H 0.058 0.942 20 H 0.068 0.932 21 H 0.061 0.939 22 H 0.153 0.847 23 H 0.114 0.886 24 H 0.088 0.912 25 H 0.105 0.895 26 H 0.052 0.948 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.029 5.834 13.388 14.604 hybrid contribution 1.833 -2.033 0.082 2.738 sum 1.862 3.802 13.470 14.119 Atomic orbital electron populations 1.22037 0.97121 1.00299 0.99666 1.19308 0.92945 0.92085 0.87589 0.98298 1.22321 1.39930 1.08856 0.93514 0.95929 1.27165 0.94190 1.08515 0.91843 1.70987 1.44072 1.09446 1.32775 0.83575 0.78910 0.70639 0.76385 1.21515 1.16678 1.19111 1.60478 1.32312 1.32470 1.05119 1.23571 0.95891 0.95135 0.90992 1.24725 0.97840 1.02547 0.90383 1.68384 1.08693 1.35289 1.09042 1.22888 0.96238 0.97957 0.98756 1.24088 0.97187 0.95958 0.94052 0.93698 0.94210 0.93220 0.93902 0.84736 0.88628 0.91155 0.89542 0.94812 0.90516 0.90272 0.88607 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.77 9.05 71.98 0.65 -5.12 16 2 C 0.19 8.82 2.04 44.17 0.09 8.91 16 3 H 0.00 -0.02 6.49 -2.39 -0.02 -0.04 16 4 C -0.61 -34.31 8.83 25.60 0.23 -34.08 16 5 H 0.02 1.40 7.92 -2.91 -0.02 1.37 16 6 C -0.02 -1.07 5.29 84.66 0.45 -0.62 16 7 N -0.94 -58.69 13.69 21.45 0.29 -58.40 16 8 Si 1.08 49.45 26.29 68.60 1.80 51.25 16 9 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 10 H -0.24 -9.85 5.75 99.48 0.57 -9.27 16 11 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 12 N -0.67 -27.03 6.43 -477.17 -3.07 -30.10 16 13 C 0.06 1.81 4.10 46.48 0.19 2.00 16 14 C -0.02 -0.70 7.59 86.41 0.66 -0.05 16 15 N -0.49 -13.02 6.56 -934.53 -6.13 -19.15 16 16 C -0.01 -0.20 9.64 127.69 1.23 1.03 16 17 C 0.02 0.45 7.79 86.41 0.67 1.13 16 18 H 0.04 1.99 4.88 -2.39 -0.01 1.98 16 19 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 20 H 0.05 1.83 7.85 -2.39 -0.02 1.81 16 21 H 0.25 16.04 8.73 -92.71 -0.81 15.23 16 22 H 0.33 13.74 7.72 -89.70 -0.69 13.05 16 23 H 0.10 3.16 7.54 -2.39 -0.02 3.15 16 24 H 0.07 2.02 7.29 -2.38 -0.02 2.00 16 25 H 0.09 2.44 8.14 -2.39 -0.02 2.43 16 26 H 0.03 0.72 7.62 -2.39 -0.02 0.70 16 27 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.07 1.96 7.92 -2.38 -0.02 1.94 16 Total: -1.00 -62.29 241.95 -2.68 -64.98 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.25 Total: 18.22 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 4.17 Total: -26.81 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -8.90 Total: -107.64 kcal Atomic # 14 Polarization: 49.45 SS G_CDS: 1.80 Total: 51.25 kcal Total: -62.29 -2.68 -64.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306980067.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.744 kcal (2) G-P(sol) polarization free energy of solvation -62.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds