Wall clock time and date at job start Mon Mar 30 2020 02:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46940 * 2 1 4 4 C 1.50698 * 109.47121 * 119.99915 * 2 1 3 5 5 H 1.08004 * 119.99562 * 114.36149 * 4 2 1 6 6 C 1.37869 * 119.99985 * 294.36599 * 4 2 1 7 7 N 1.31522 * 119.99963 * 156.85044 * 6 4 2 8 8 Si 1.86803 * 120.00490 * 336.85337 * 6 4 2 9 9 H 1.48490 * 109.47502 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.46906 * 300.00200 * 8 6 4 11 11 H 1.48501 * 109.46816 * 59.99754 * 8 6 4 12 12 N 1.46897 * 109.47026 * 240.00411 * 2 1 3 13 13 C 1.46897 * 111.00501 * 85.00020 * 12 2 1 14 14 C 1.53938 * 113.73286 * 251.72708 * 13 12 2 15 15 N 1.47963 * 86.18072 * 221.91747 * 14 13 12 16 16 C 1.46898 * 111.00195 * 137.58204 * 15 14 13 17 17 C 1.47965 * 90.76193 * 24.68698 * 15 14 13 18 18 H 1.09001 * 109.47164 * 173.08507 * 1 2 3 19 19 H 1.08994 * 109.47265 * 293.08479 * 1 2 3 20 20 H 1.09002 * 109.47128 * 53.09230 * 1 2 3 21 21 H 0.96997 * 119.99860 * 354.93731 * 7 6 4 22 22 H 1.00898 * 111.00247 * 321.03993 * 12 2 1 23 23 H 1.09002 * 112.93683 * 23.42973 * 13 12 2 24 24 H 1.08999 * 113.76046 * 336.23618 * 14 13 12 25 25 H 1.09000 * 113.75709 * 107.60289 * 14 13 12 26 26 H 1.09000 * 109.46508 * 320.64035 * 16 15 14 27 27 H 1.08994 * 109.47078 * 80.63736 * 16 15 14 28 28 H 1.08995 * 109.46751 * 200.64385 * 16 15 14 29 29 H 1.09002 * 113.76279 * 220.99566 * 17 15 14 30 30 H 1.09002 * 113.75694 * 89.63011 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5761 -1.6385 1.1339 6 6 1.7977 -0.1755 2.4793 7 7 1.8072 -0.9530 3.5401 8 14 1.4662 1.6535 2.6649 9 1 1.2473 1.9739 4.0982 10 1 2.6319 2.4217 2.1589 11 1 0.2564 2.0188 1.8851 12 7 2.0196 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 1.0027 -0.0433 -3.4113 15 7 2.0714 0.1825 -4.4094 16 6 1.9946 -0.8038 -5.4953 17 6 3.1034 -0.1977 -3.4196 18 1 -0.3633 -1.0202 -0.1237 19 1 -0.3633 0.4029 0.9453 20 1 -0.3633 0.6172 -0.8217 21 1 1.9061 -1.9124 3.4373 22 1 1.4496 -1.4979 -1.4101 23 1 2.1618 1.2690 -2.0520 24 1 0.6188 -1.0634 -3.4021 25 1 0.2142 0.7089 -3.4344 26 1 1.7399 -1.7798 -5.0821 27 1 1.2285 -0.5000 -6.2085 28 1 2.9585 -0.8635 -6.0006 29 1 3.9933 0.4310 -3.4492 30 1 3.3340 -1.2631 -3.4128 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306980069.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:42 Heat of formation + Delta-G solvation = 35.272499 kcal Electronic energy + Delta-G solvation = -11456.622537 eV Core-core repulsion = 9480.914379 eV Total energy + Delta-G solvation = -1975.708157 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.67923 -35.45758 -32.34604 -30.12377 -27.56036 -25.88927 -24.68954 -22.77637 -20.11912 -19.53316 -17.36965 -15.69919 -15.60063 -14.69229 -14.11334 -13.50863 -13.20235 -12.71566 -12.54397 -12.46547 -11.87946 -11.54925 -11.38680 -11.18921 -10.69124 -10.52118 -10.22349 -10.05898 -9.71921 -9.01081 -8.75208 -8.15228 -7.48929 -6.41377 -3.98332 3.40411 3.46362 3.62831 4.11558 4.53432 4.80129 4.94029 5.17393 5.24032 5.36821 5.46430 5.63954 5.69208 5.80519 5.86542 6.03830 6.24419 6.29316 6.41021 6.49169 6.63133 6.85039 7.14800 7.20293 7.80843 8.25372 8.34625 8.47951 9.04280 9.66176 10.95363 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.074031 B = 0.009849 C = 0.009590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.126688 B = 2842.304829 C = 2919.154662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.189 3.811 3 H 0.027 0.973 4 C -0.591 4.591 5 H 0.063 0.937 6 C 0.034 3.966 7 N -0.902 5.902 8 Si 1.036 2.964 9 H -0.285 1.285 10 H -0.283 1.283 11 H -0.279 1.279 12 N -0.663 5.663 13 C 0.067 3.933 14 C -0.029 4.029 15 N -0.488 5.488 16 C -0.008 4.008 17 C 0.007 3.993 18 H 0.042 0.958 19 H 0.056 0.944 20 H 0.020 0.980 21 H 0.269 0.731 22 H 0.331 0.669 23 H 0.098 0.902 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.032 0.968 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.592 1.969 -12.988 13.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.080 3.920 3 H 0.045 0.955 4 C -0.629 4.629 5 H 0.081 0.919 6 C -0.172 4.172 7 N -0.536 5.536 8 Si 0.864 3.136 9 H -0.211 1.211 10 H -0.210 1.210 11 H -0.206 1.206 12 N -0.291 5.291 13 C -0.046 4.046 14 C -0.160 4.160 15 N -0.211 5.211 16 C -0.157 4.157 17 C -0.123 4.123 18 H 0.061 0.939 19 H 0.075 0.925 20 H 0.039 0.961 21 H 0.078 0.922 22 H 0.149 0.851 23 H 0.116 0.884 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.131 3.842 -12.023 12.672 hybrid contribution -0.805 -2.030 -1.170 2.478 sum -1.936 1.811 -13.193 13.457 Atomic orbital electron populations 1.22845 1.01020 0.99650 0.99930 1.19577 0.89096 0.94395 0.88919 0.95526 1.21917 1.39730 1.10974 0.90281 0.91916 1.25645 0.93763 1.05641 0.92142 1.70847 1.44597 1.06296 1.31852 0.84162 0.77041 0.76355 0.76054 1.21092 1.20960 1.20590 1.60618 1.57351 1.08318 1.02830 1.23480 0.93131 0.98204 0.89740 1.24828 0.96686 1.00669 0.93848 1.68388 1.04794 1.42453 1.05445 1.22814 1.02188 0.94315 0.96391 1.24163 0.96656 1.00376 0.91071 0.93880 0.92532 0.96067 0.92162 0.85091 0.88354 0.91443 0.89971 0.94913 0.91664 0.91653 0.89624 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.79 8.93 37.16 0.33 -3.45 16 2 C 0.19 4.46 2.16 -68.87 -0.15 4.31 16 3 H 0.03 0.65 6.04 -51.93 -0.31 0.33 16 4 C -0.59 -16.69 9.05 -34.44 -0.31 -17.01 16 5 H 0.06 1.94 8.06 -52.48 -0.42 1.51 16 6 C 0.03 0.97 5.19 -17.82 -0.09 0.88 16 7 N -0.90 -27.70 13.70 55.43 0.76 -26.94 16 8 Si 1.04 25.15 26.44 -169.99 -4.50 20.65 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.29 6.15 56.52 0.35 -5.94 16 12 N -0.66 -13.57 6.36 -102.18 -0.65 -14.22 16 13 C 0.07 1.15 4.25 -69.40 -0.30 0.85 16 14 C -0.03 -0.44 7.59 -2.76 -0.02 -0.46 16 15 N -0.49 -7.06 6.56 -246.74 -1.62 -8.67 16 16 C -0.01 -0.09 9.65 60.06 0.58 0.49 16 17 C 0.01 0.10 7.79 -2.76 -0.02 0.08 16 18 H 0.04 0.90 8.00 -51.93 -0.42 0.48 16 19 H 0.06 1.30 5.48 -51.93 -0.28 1.01 16 20 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 21 H 0.27 8.22 8.73 -40.82 -0.36 7.86 16 22 H 0.33 6.43 7.84 -39.29 -0.31 6.12 16 23 H 0.10 1.77 7.48 -51.93 -0.39 1.38 16 24 H 0.07 0.96 7.29 -51.93 -0.38 0.58 16 25 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.03 0.38 7.62 -51.93 -0.40 -0.02 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.07 1.07 7.92 -51.93 -0.41 0.66 16 LS Contribution 243.20 15.07 3.66 3.66 Total: -1.00 -29.54 243.20 -6.96 -36.50 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -4.64 Total: 3.32 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: 0.02 Total: -14.30 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -1.51 Total: -49.83 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -4.50 Total: 20.65 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.54 -6.96 -36.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306980069.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.769 kcal (2) G-P(sol) polarization free energy of solvation -29.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds