Wall clock time and date at job start Mon Mar 30 2020 02:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46940 * 2 1 4 4 C 1.50698 * 109.47121 * 119.99915 * 2 1 3 5 5 H 1.08004 * 119.99562 * 114.36149 * 4 2 1 6 6 C 1.37869 * 119.99985 * 294.36599 * 4 2 1 7 7 N 1.31522 * 119.99963 * 156.85044 * 6 4 2 8 8 Si 1.86803 * 120.00490 * 336.85337 * 6 4 2 9 9 H 1.48490 * 109.47502 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.46906 * 300.00200 * 8 6 4 11 11 H 1.48501 * 109.46816 * 59.99754 * 8 6 4 12 12 N 1.46897 * 109.47026 * 240.00411 * 2 1 3 13 13 C 1.46897 * 111.00501 * 85.00020 * 12 2 1 14 14 C 1.53938 * 113.73286 * 251.72708 * 13 12 2 15 15 N 1.47963 * 86.18072 * 221.91747 * 14 13 12 16 16 C 1.46898 * 111.00195 * 137.58204 * 15 14 13 17 17 C 1.47965 * 90.76193 * 24.68698 * 15 14 13 18 18 H 1.09001 * 109.47164 * 173.08507 * 1 2 3 19 19 H 1.08994 * 109.47265 * 293.08479 * 1 2 3 20 20 H 1.09002 * 109.47128 * 53.09230 * 1 2 3 21 21 H 0.96997 * 119.99860 * 354.93731 * 7 6 4 22 22 H 1.00898 * 111.00247 * 321.03993 * 12 2 1 23 23 H 1.09002 * 112.93683 * 23.42973 * 13 12 2 24 24 H 1.08999 * 113.76046 * 336.23618 * 14 13 12 25 25 H 1.09000 * 113.75709 * 107.60289 * 14 13 12 26 26 H 1.09000 * 109.46508 * 320.64035 * 16 15 14 27 27 H 1.08994 * 109.47078 * 80.63736 * 16 15 14 28 28 H 1.08995 * 109.46751 * 200.64385 * 16 15 14 29 29 H 1.09002 * 113.76279 * 220.99566 * 17 15 14 30 30 H 1.09002 * 113.75694 * 89.63011 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5761 -1.6385 1.1339 6 6 1.7977 -0.1755 2.4793 7 7 1.8072 -0.9530 3.5401 8 14 1.4662 1.6535 2.6649 9 1 1.2473 1.9739 4.0982 10 1 2.6319 2.4217 2.1589 11 1 0.2564 2.0188 1.8851 12 7 2.0196 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 1.0027 -0.0433 -3.4113 15 7 2.0714 0.1825 -4.4094 16 6 1.9946 -0.8038 -5.4953 17 6 3.1034 -0.1977 -3.4196 18 1 -0.3633 -1.0202 -0.1237 19 1 -0.3633 0.4029 0.9453 20 1 -0.3633 0.6172 -0.8217 21 1 1.9061 -1.9124 3.4373 22 1 1.4496 -1.4979 -1.4101 23 1 2.1618 1.2690 -2.0520 24 1 0.6188 -1.0634 -3.4021 25 1 0.2142 0.7089 -3.4344 26 1 1.7399 -1.7798 -5.0821 27 1 1.2285 -0.5000 -6.2085 28 1 2.9585 -0.8635 -6.0006 29 1 3.9933 0.4310 -3.4492 30 1 3.3340 -1.2631 -3.4128 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306980069.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:41 Heat of formation + Delta-G solvation = 11.016565 kcal Electronic energy + Delta-G solvation = -11457.674353 eV Core-core repulsion = 9480.914379 eV Total energy + Delta-G solvation = -1976.759974 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.90865 -37.19180 -34.37852 -31.59723 -28.99426 -27.12984 -26.66134 -24.02291 -21.92791 -20.94422 -19.43395 -17.08685 -16.87525 -15.89024 -15.80733 -15.22899 -14.82052 -14.25238 -14.04547 -13.70762 -13.62443 -13.22109 -12.84524 -12.54267 -12.38046 -11.93892 -11.86308 -11.72573 -11.44831 -11.09964 -10.34770 -9.87808 -9.11871 -8.66272 -6.27533 1.47466 1.54560 1.73605 2.52016 2.95414 3.04722 3.44464 3.71002 4.05482 4.18455 4.34996 4.47320 4.50304 4.56823 4.66551 4.72038 4.78469 4.88766 4.94305 5.04477 5.12677 5.31886 5.45841 5.89439 6.05427 6.11291 6.43539 6.68622 6.78204 7.46950 8.65489 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.074031 B = 0.009849 C = 0.009590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.126688 B = 2842.304829 C = 2919.154662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.192 3.808 3 H 0.028 0.972 4 C -0.596 4.596 5 H 0.020 0.980 6 C -0.017 4.017 7 N -0.936 5.936 8 Si 1.078 2.922 9 H -0.289 1.289 10 H -0.268 1.268 11 H -0.247 1.247 12 N -0.675 5.675 13 C 0.056 3.944 14 C -0.019 4.019 15 N -0.493 5.493 16 C -0.009 4.009 17 C 0.012 3.988 18 H 0.042 0.958 19 H 0.042 0.958 20 H 0.054 0.946 21 H 0.253 0.747 22 H 0.335 0.665 23 H 0.092 0.908 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.035 0.965 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.384 3.388 -14.945 15.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.082 3.918 3 H 0.046 0.954 4 C -0.634 4.634 5 H 0.038 0.962 6 C -0.216 4.216 7 N -0.571 5.571 8 Si 0.899 3.101 9 H -0.215 1.215 10 H -0.194 1.194 11 H -0.171 1.171 12 N -0.304 5.304 13 C -0.055 4.055 14 C -0.149 4.149 15 N -0.216 5.216 16 C -0.158 4.158 17 C -0.117 4.117 18 H 0.061 0.939 19 H 0.061 0.939 20 H 0.072 0.928 21 H 0.062 0.938 22 H 0.153 0.847 23 H 0.110 0.890 24 H 0.093 0.907 25 H 0.109 0.891 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.923 5.248 -14.026 15.099 hybrid contribution -0.494 -2.567 -0.636 2.690 sum -2.417 2.681 -14.663 15.101 Atomic orbital electron populations 1.22673 0.99101 1.00357 1.00489 1.19383 0.90360 0.93755 0.88302 0.95441 1.22151 1.38871 1.09599 0.92826 0.96201 1.27066 0.93182 1.09385 0.91929 1.70974 1.47582 1.05583 1.32976 0.83628 0.78829 0.71229 0.76389 1.21501 1.19374 1.17088 1.60458 1.57626 1.09084 1.03273 1.23565 0.95639 0.97157 0.89172 1.24738 0.96321 1.01339 0.92524 1.68386 1.04108 1.43431 1.05652 1.22882 1.03352 0.93793 0.95790 1.24106 0.96701 1.00465 0.90450 0.93885 0.93885 0.92753 0.93845 0.84664 0.89021 0.90731 0.89133 0.94630 0.90356 0.90616 0.89199 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.82 8.93 71.98 0.64 -6.18 16 2 C 0.19 8.81 2.16 44.17 0.10 8.90 16 3 H 0.03 1.28 6.04 -2.39 -0.01 1.26 16 4 C -0.60 -34.18 9.05 25.60 0.23 -33.95 16 5 H 0.02 1.27 8.06 -2.91 -0.02 1.25 16 6 C -0.02 -0.99 5.19 84.65 0.44 -0.55 16 7 N -0.94 -58.95 13.70 21.45 0.29 -58.66 16 8 Si 1.08 49.81 26.44 68.60 1.81 51.62 16 9 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.25 -10.06 6.15 99.48 0.61 -9.44 16 12 N -0.68 -26.87 6.36 -477.19 -3.03 -29.91 16 13 C 0.06 1.81 4.25 46.48 0.20 2.01 16 14 C -0.02 -0.49 7.59 86.41 0.66 0.16 16 15 N -0.49 -12.77 6.56 -934.54 -6.13 -18.90 16 16 C -0.01 -0.19 9.65 127.69 1.23 1.04 16 17 C 0.01 0.35 7.79 86.40 0.67 1.02 16 18 H 0.04 1.72 8.00 -2.39 -0.02 1.70 16 19 H 0.04 1.86 5.48 -2.39 -0.01 1.84 16 20 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 21 H 0.25 16.18 8.73 -92.71 -0.81 15.37 16 22 H 0.33 12.65 7.84 -89.70 -0.70 11.94 16 23 H 0.09 3.09 7.48 -2.39 -0.02 3.07 16 24 H 0.07 1.89 7.29 -2.39 -0.02 1.87 16 25 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.04 0.72 7.62 -2.39 -0.02 0.70 16 27 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.07 2.01 7.92 -2.39 -0.02 1.99 16 Total: -1.00 -63.67 243.20 -2.61 -66.28 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.27 Total: 17.10 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: 4.17 Total: -27.54 kcal Atomic # 7 Polarization: -98.59 SS G_CDS: -8.87 Total: -107.46 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 1.81 Total: 51.62 kcal Total: -63.67 -2.61 -66.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306980069.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.301 kcal (2) G-P(sol) polarization free energy of solvation -63.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds