Wall clock time and date at job start Mon Mar 30 2020 02:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47472 * 2 1 4 4 H 1.09005 * 109.47404 * 56.89343 * 3 2 1 5 5 C 1.50698 * 109.47430 * 176.90150 * 3 2 1 6 6 H 1.08005 * 119.99847 * 115.93988 * 5 3 2 7 7 C 1.37875 * 120.00106 * 295.93982 * 5 3 2 8 8 N 1.31518 * 119.99621 * 352.18592 * 7 5 3 9 9 Si 1.86793 * 120.00006 * 172.18476 * 7 5 3 10 10 H 1.48501 * 109.47206 * 265.09341 * 9 7 5 11 11 H 1.48500 * 109.47219 * 25.09661 * 9 7 5 12 12 H 1.48502 * 109.46928 * 145.09761 * 9 7 5 13 13 N 1.46911 * 109.46754 * 296.90243 * 3 2 1 14 14 C 1.47640 * 110.99687 * 179.97438 * 13 3 2 15 15 C 1.54514 * 105.94756 * 123.72094 * 14 13 3 16 16 C 1.55082 * 102.51258 * 21.35791 * 15 14 13 17 17 N 1.46199 * 110.99838 * 300.60883 * 13 3 2 18 18 H 1.08991 * 109.47065 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47164 * 300.00466 * 1 2 3 20 20 H 1.09005 * 109.46796 * 60.00326 * 1 2 3 21 21 H 1.09000 * 109.47164 * 239.99534 * 2 1 3 22 22 H 1.09005 * 109.46796 * 119.99674 * 2 1 3 23 23 H 0.97000 * 119.99439 * 180.02562 * 8 7 5 24 24 H 1.09000 * 110.15679 * 242.83977 * 14 13 3 25 25 H 1.09002 * 110.15893 * 4.53112 * 14 13 3 26 26 H 1.09000 * 110.80323 * 139.61129 * 15 14 13 27 27 H 1.09000 * 110.80273 * 263.10357 * 15 14 13 28 28 H 1.08996 * 110.85212 * 82.23392 * 16 15 14 29 29 H 1.09002 * 110.85447 * 205.66862 * 16 15 14 30 30 H 1.00900 * 111.00167 * 333.06841 * 17 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6320 1.9722 0.8609 5 6 3.5451 1.4431 0.0768 6 1 4.1275 1.8373 -0.7430 7 6 4.1787 0.9406 1.1935 8 7 3.4755 0.6033 2.2525 9 14 6.0356 0.7387 1.2023 10 1 6.3844 -0.6511 0.8126 11 1 6.6416 1.6904 0.2367 12 1 6.5573 1.0164 2.5647 13 7 1.6125 2.1130 -1.2352 14 6 2.0872 3.5105 -1.2701 15 6 2.9039 3.6491 -2.5744 16 6 2.3660 2.4757 -3.4339 17 7 2.1304 1.4200 -2.4138 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 1.8934 -0.5139 -0.8899 22 1 1.8933 -0.5138 0.8901 23 1 3.9212 0.2501 3.0382 24 1 1.2390 4.1951 -1.2836 25 1 2.7199 3.7140 -0.4061 26 1 2.7036 4.6057 -3.0568 27 1 3.9694 3.5287 -2.3785 28 1 1.4347 2.7519 -3.9282 29 1 3.1103 2.1558 -4.1632 30 1 2.9848 0.9286 -2.1980 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307018891.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:27 Heat of formation + Delta-G solvation = 7.263455 kcal Electronic energy + Delta-G solvation = -11964.780270 eV Core-core repulsion = 9987.857549 eV Total energy + Delta-G solvation = -1976.922721 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.87505 -36.00304 -33.69485 -31.29858 -30.64472 -28.22467 -25.07040 -23.30715 -22.02490 -21.19438 -18.45210 -17.59202 -16.55231 -16.21701 -15.12155 -14.91478 -14.46071 -14.19128 -13.90096 -13.28880 -13.11367 -12.87932 -12.78645 -12.51779 -12.22454 -12.10260 -11.93090 -11.54812 -11.45905 -10.97221 -10.50892 -10.00034 -8.90747 -8.13087 -6.32089 1.35054 1.37700 1.45271 2.35914 3.04761 3.14620 3.71766 3.98834 4.12358 4.41448 4.61501 4.72471 4.74008 4.84833 4.92445 5.00127 5.03537 5.21824 5.25796 5.41881 5.47885 5.60005 5.74098 5.88692 5.96281 6.17375 6.43651 6.74946 7.00471 7.38345 8.87073 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.034720 B = 0.017786 C = 0.013454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.262547 B = 1573.930808 C = 2080.604414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 C 0.196 3.804 4 H 0.010 0.990 5 C -0.557 4.557 6 H 0.051 0.949 7 C 0.026 3.974 8 N -0.909 5.909 9 Si 0.949 3.051 10 H -0.274 1.274 11 H -0.272 1.272 12 H -0.285 1.285 13 N -0.347 5.347 14 C 0.005 3.995 15 C -0.153 4.153 16 C 0.031 3.969 17 N -0.504 5.504 18 H 0.047 0.953 19 H 0.031 0.969 20 H 0.058 0.942 21 H 0.041 0.959 22 H 0.043 0.957 23 H 0.263 0.737 24 H 0.080 0.920 25 H 0.038 0.962 26 H 0.099 0.901 27 H 0.052 0.948 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.485 2.973 -7.737 8.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.129 4.129 3 C 0.087 3.913 4 H 0.028 0.972 5 C -0.596 4.596 6 H 0.069 0.931 7 C -0.175 4.175 8 N -0.547 5.547 9 Si 0.775 3.225 10 H -0.200 1.200 11 H -0.196 1.196 12 H -0.211 1.211 13 N -0.162 5.162 14 C -0.125 4.125 15 C -0.193 4.193 16 C -0.099 4.099 17 N -0.224 5.224 18 H 0.066 0.934 19 H 0.050 0.950 20 H 0.077 0.923 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.073 0.927 24 H 0.098 0.902 25 H 0.056 0.944 26 H 0.118 0.882 27 H 0.071 0.929 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.685 2.617 -7.807 8.405 hybrid contribution 2.821 0.396 1.023 3.027 sum 1.135 3.013 -6.784 7.509 Atomic orbital electron populations 1.21554 0.96209 0.99912 1.00653 1.21214 0.94755 0.97467 0.99422 1.19565 0.92310 0.92310 0.87071 0.97186 1.21788 0.93156 1.41698 1.02936 0.93067 1.25617 1.02074 0.94884 0.94911 1.70067 1.37149 1.43448 1.04053 0.85696 0.80998 0.78561 0.77286 1.19993 1.19624 1.21086 1.68343 1.48856 0.99432 0.99564 1.23442 0.98221 0.93010 0.97817 1.23336 0.98939 1.01538 0.95507 1.23518 1.01367 0.90188 0.94843 1.67149 1.33042 1.20486 1.01687 0.93437 0.95014 0.92257 0.94053 0.93873 0.92736 0.90156 0.94376 0.88200 0.92898 0.88872 0.89172 0.86949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.25 9.78 71.98 0.70 -4.55 16 2 C -0.09 -4.36 5.21 30.59 0.16 -4.21 16 3 C 0.20 9.92 1.58 44.17 0.07 9.99 16 4 H 0.01 0.59 8.13 -2.38 -0.02 0.57 16 5 C -0.56 -29.52 6.31 25.60 0.16 -29.36 16 6 H 0.05 2.68 6.61 -2.91 -0.02 2.66 16 7 C 0.03 1.42 5.20 84.65 0.44 1.86 16 8 N -0.91 -51.96 11.98 21.45 0.26 -51.70 16 9 Si 0.95 42.80 29.54 68.60 2.03 44.82 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 12 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 13 N -0.35 -15.15 5.00 -490.92 -2.45 -17.60 16 14 C 0.00 0.19 6.36 86.68 0.55 0.74 16 15 C -0.15 -4.82 6.92 31.82 0.22 -4.59 16 16 C 0.03 0.96 7.77 86.67 0.67 1.63 16 17 N -0.50 -19.92 7.03 -180.14 -1.27 -21.19 16 18 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 19 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 20 H 0.06 2.42 7.69 -2.38 -0.02 2.40 16 21 H 0.04 1.97 7.22 -2.39 -0.02 1.95 16 22 H 0.04 2.32 6.65 -2.38 -0.02 2.30 16 23 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 24 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 25 H 0.04 1.70 6.86 -2.39 -0.02 1.69 16 26 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.05 1.78 7.99 -2.39 -0.02 1.76 16 28 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.31 13.36 6.57 -204.27 -1.34 12.02 16 Total: -1.00 -58.05 238.87 1.31 -56.74 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -0.23 Total: 17.42 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 2.98 Total: -28.49 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -3.46 Total: -90.49 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -58.05 1.31 -56.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307018891.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.002 kcal (2) G-P(sol) polarization free energy of solvation -58.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds