Wall clock time and date at job start Mon Mar 30 2020 02:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.69802 * 2 1 4 4 C 1.53629 * 109.66156 * 120.58905 * 2 1 3 5 5 H 1.08991 * 109.66098 * 54.54416 * 4 2 1 6 6 N 1.46894 * 109.43314 * 294.41778 * 4 2 1 7 7 C 1.53042 * 109.23893 * 174.54903 * 4 2 1 8 8 C 1.53042 * 109.53866 * 298.51488 * 7 4 2 9 9 C 1.53187 * 109.31465 * 61.36407 * 8 7 4 10 10 N 1.46921 * 108.77705 * 305.36760 * 9 8 7 11 11 C 1.36938 * 120.62964 * 233.59104 * 10 9 8 12 12 H 1.08001 * 120.00408 * 150.44049 * 11 10 9 13 13 C 1.38809 * 119.99825 * 330.43014 * 11 10 9 14 14 N 1.31624 * 120.00279 * 344.31554 * 13 11 10 15 15 Si 1.86799 * 119.99872 * 164.03486 * 13 11 10 16 16 H 1.48508 * 109.47457 * 266.60329 * 15 13 11 17 17 H 1.48501 * 109.47469 * 26.60164 * 15 13 11 18 18 H 1.48498 * 109.47233 * 146.60409 * 15 13 11 19 19 H 1.09004 * 109.46767 * 180.35656 * 1 2 3 20 20 H 1.09003 * 109.46722 * 300.35809 * 1 2 3 21 21 H 1.08999 * 109.46738 * 60.35675 * 1 2 3 22 22 H 1.00901 * 111.00161 * 180.29305 * 6 4 2 23 23 H 1.00903 * 111.00091 * 304.24019 * 6 4 2 24 24 H 1.08995 * 109.46177 * 178.48760 * 7 4 2 25 25 H 1.09008 * 109.45214 * 58.52576 * 7 4 2 26 26 H 1.09005 * 109.49516 * 301.41082 * 8 7 4 27 27 H 1.09004 * 109.52056 * 181.33365 * 8 7 4 28 28 H 1.09007 * 109.58544 * 185.57972 * 9 8 7 29 29 H 1.08998 * 109.70538 * 65.22645 * 9 8 7 30 30 H 0.96998 * 119.99987 * 179.72183 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7362 1.2454 5 1 1.6097 -1.7336 1.2897 6 7 1.6721 0.0174 2.4493 7 6 3.5712 -0.8497 1.1677 8 6 3.9615 -1.6627 -0.0688 9 6 3.4657 -0.9420 -1.3263 10 7 2.0227 -0.6995 -1.1944 11 6 1.1538 -1.1128 -2.1689 12 1 0.1397 -1.3797 -1.9105 13 6 1.5765 -1.1885 -3.4889 14 7 2.6855 -0.5847 -3.8605 15 14 0.5756 -2.1537 -4.7362 16 1 1.0994 -3.5405 -4.8248 17 1 -0.8465 -2.1881 -4.3098 18 1 0.6780 -1.5001 -6.0656 19 1 -0.3633 -1.0277 0.0064 20 1 -0.3633 0.5194 0.8868 21 1 -0.3633 0.5083 -0.8932 22 1 2.0049 -0.4438 3.2828 23 1 2.0108 0.9667 2.4018 24 1 3.9443 -1.3478 2.0625 25 1 4.0064 0.1473 1.0990 26 1 3.5062 -2.6515 -0.0127 27 1 5.0461 -1.7635 -0.1109 28 1 3.6533 -1.5638 -2.2017 29 1 3.9876 0.0088 -1.4348 30 1 2.9829 -0.6410 -4.7821 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307044593.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:44 Heat of formation + Delta-G solvation = 9.812465 kcal Electronic energy + Delta-G solvation = -11984.173156 eV Core-core repulsion = 10007.360969 eV Total energy + Delta-G solvation = -1976.812187 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.07875 -34.00011 -32.15118 -31.20378 -28.22808 -25.64972 -24.76843 -21.53132 -20.48165 -19.18336 -16.35586 -15.41346 -14.99707 -14.11297 -13.72459 -13.42393 -13.13869 -12.74363 -12.44074 -11.62383 -11.36886 -10.93891 -10.84448 -10.64528 -10.43829 -10.24176 -10.05910 -9.93058 -9.69940 -9.25002 -8.42889 -8.16751 -6.58499 -5.73327 -3.16986 3.40726 3.47704 3.49127 4.51786 5.02697 5.35152 5.48879 5.57371 5.68217 5.83782 6.02021 6.27705 6.32624 6.50508 6.57420 6.62232 6.72962 6.75086 6.91807 7.15056 7.23377 7.43357 7.57189 7.70112 7.83363 7.88662 8.52403 9.27587 9.91408 10.48725 11.35497 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.053823 B = 0.014441 C = 0.012372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.094682 B = 1938.520756 C = 2262.603753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.179 3.821 3 H 0.020 0.980 4 C 0.076 3.924 5 H 0.075 0.925 6 N -0.843 5.843 7 C -0.141 4.141 8 C -0.139 4.139 9 C 0.170 3.830 10 N -0.587 5.587 11 C -0.247 4.247 12 H 0.071 0.929 13 C 0.001 3.999 14 N -0.905 5.905 15 Si 0.901 3.099 16 H -0.289 1.289 17 H -0.278 1.278 18 H -0.292 1.292 19 H 0.048 0.952 20 H 0.048 0.952 21 H 0.054 0.946 22 H 0.330 0.670 23 H 0.333 0.667 24 H 0.040 0.960 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.085 0.915 29 H 0.016 0.984 30 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.644 -0.327 8.287 8.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.072 3.928 3 H 0.038 0.962 4 C -0.037 4.037 5 H 0.093 0.907 6 N -0.370 5.370 7 C -0.181 4.181 8 C -0.179 4.179 9 C 0.045 3.955 10 N -0.311 5.311 11 C -0.377 4.377 12 H 0.088 0.912 13 C -0.198 4.198 14 N -0.550 5.550 15 Si 0.731 3.269 16 H -0.216 1.216 17 H -0.204 1.204 18 H -0.219 1.219 19 H 0.067 0.933 20 H 0.067 0.933 21 H 0.073 0.927 22 H 0.141 0.859 23 H 0.145 0.855 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.034 0.966 30 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.081 -0.449 7.879 7.892 hybrid contribution 0.787 -0.410 -0.556 1.047 sum 0.707 -0.859 7.323 7.407 Atomic orbital electron populations 1.21693 0.95513 1.01125 1.00163 1.20425 0.93477 0.92860 0.86036 0.96242 1.22182 0.92518 0.98122 0.90871 0.90654 1.58971 1.67660 1.06134 1.04234 1.22248 0.98043 0.99884 0.97932 1.22150 0.98812 0.99591 0.97382 1.20764 0.83538 0.96978 0.94262 1.44136 1.02857 1.65269 1.18821 1.19224 0.95226 1.37191 0.86062 0.91167 1.25097 0.98028 0.99688 0.96950 1.70039 1.24342 1.43932 1.16684 0.86290 0.79851 0.79803 0.80941 1.21568 1.20351 1.21853 0.93303 0.93275 0.92730 0.85888 0.85510 0.94085 0.93070 0.92746 0.93532 0.89643 0.96601 0.93781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 7.84 37.16 0.29 -2.32 16 2 C 0.18 3.89 3.12 -67.37 -0.21 3.68 16 3 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 4 C 0.08 1.38 2.81 -67.37 -0.19 1.20 16 5 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 6 N -0.84 -12.57 8.78 -4.38 -0.04 -12.61 16 7 C -0.14 -2.47 5.45 -26.69 -0.15 -2.62 16 8 C -0.14 -2.76 6.08 -26.61 -0.16 -2.92 16 9 C 0.17 4.16 5.28 -3.72 -0.02 4.14 16 10 N -0.59 -14.94 2.98 -164.52 -0.49 -15.43 16 11 C -0.25 -6.82 8.57 -15.06 -0.13 -6.95 16 12 H 0.07 1.90 6.24 -52.49 -0.33 1.58 16 13 C 0.00 0.02 4.94 -17.43 -0.09 -0.07 16 14 N -0.91 -26.62 11.22 55.49 0.62 -26.00 16 15 Si 0.90 21.98 29.58 -169.99 -5.03 16.95 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 H 0.05 1.02 7.44 -51.93 -0.39 0.63 16 20 H 0.05 0.89 7.82 -51.93 -0.41 0.49 16 21 H 0.05 1.19 7.63 -51.93 -0.40 0.79 16 22 H 0.33 4.19 9.04 -39.29 -0.36 3.83 16 23 H 0.33 4.65 8.98 -39.29 -0.35 4.30 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 2.32 6.13 -51.93 -0.32 2.00 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 236.56 15.07 3.56 3.56 Total: -1.00 -29.09 236.56 -6.66 -35.75 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -4.64 Total: 3.64 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -0.65 Total: -5.86 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.09 Total: -54.04 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.09 -6.66 -35.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307044593.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.559 kcal (2) G-P(sol) polarization free energy of solvation -29.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds